SMTL ID : 7ep0.1

Crystal structure of ZYG11B bound to GSTE degron

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.16 Å

Oligo State

homo-dimer

Ligands

2 x CGO: sodium 3,3'-(1E,1'E)-biphenyl-4,4'-diylbis(diazene-2,1-diyl)bis(4-aminonaphthalene-1-sulfonate)(Non-covalent)

CGO.1: 16 residues within 4Å: Chain A: Q.8, I.15, Q.18, L.19, I.22, A.42, N.45, L.46 Chain B: L.19, K.26, T.35, F.38, T.39, A.42, N.45 Ligands: CGO.2 14 PLIP interactions: 8 interactions with chain A, 6 interactions with chain B Hydrophobic interactions: A:I.15, A:Q.18, A:L.19, A:I.22, A:N.45, A:L.46, B:L.19, B:T.35, B:F.38 Hydrogen bonds: A:Q.18, A:A.42, B:K.26, B:K.26, B:N.45 CGO.2: 15 residues within 4Å: Chain A: I.22, Q.25, K.26, T.35, T.39, A.42, N.45 Chain B: Q.8, I.15, Q.18, L.19, A.42, N.45, L.46 Ligands: CGO.1 12 PLIP interactions: 7 interactions with chain B, 5 interactions with chain A Hydrophobic interactions: B:I.15, B:I.15, B:L.19, B:N.45, B:L.46, B:L.46, A:I.22, A:T.35, A:A.42 Hydrogen bonds: B:A.42, A:N.45 Salt bridges: A:K.26

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yan, X. et al., Molecular basis for recognition of Gly/N-degrons by CRL2 ZYG11B and CRL2 ZER1 . Mol.Cell (2021)

Release Date

2021-07-14

Peptides

Protein zyg-11 homolog B: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Protein zyg-11 homolog B