SMTL ID : 7esp.2 (1 other biounit)

Structure and mutation analysis of the hexameric P4 from Pseudomonas aeruginosa phage phiYY

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.43 Å

Oligo State

homo-hexamer

Ligands

6 x TAR: D(-)-TARTARIC ACID(Non-covalent)

TAR.1: 6 residues within 4Å: Chain A: T.146, G.147, A.148, G.149, K.150, S.151 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:G.147, A:G.149, A:K.150, A:S.151, A:S.151, A:S.151 Salt bridges: A:K.150 TAR.2: 7 residues within 4Å: Chain B: G.145, T.146, G.147, A.148, G.149, K.150, S.151 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:G.147, B:A.148, B:G.149, B:K.150, B:K.150, B:K.150, B:S.151 Salt bridges: B:K.150 TAR.4: 6 residues within 4Å: Chain C: T.146, G.147, A.148, G.149, K.150, S.151 7 PLIP interactions: 7 interactions with chain C Hydrogen bonds: C:G.147, C:G.149, C:K.150, C:S.151, C:S.151, C:S.151 Salt bridges: C:K.150 TAR.5: 7 residues within 4Å: Chain D: G.145, T.146, G.147, A.148, G.149, K.150, S.151 8 PLIP interactions: 8 interactions with chain D Hydrogen bonds: D:G.147, D:A.148, D:G.149, D:K.150, D:K.150, D:K.150, D:S.151 Salt bridges: D:K.150 TAR.7: 6 residues within 4Å: Chain E: T.146, G.147, A.148, G.149, K.150, S.151 7 PLIP interactions: 7 interactions with chain E Hydrogen bonds: E:G.147, E:G.149, E:K.150, E:S.151, E:S.151, E:S.151 Salt bridges: E:K.150 TAR.8: 7 residues within 4Å: Chain F: G.145, T.146, G.147, A.148, G.149, K.150, S.151 8 PLIP interactions: 8 interactions with chain F Hydrogen bonds: F:G.147, F:A.148, F:G.149, F:K.150, F:K.150, F:K.150, F:S.151 Salt bridges: F:K.150

3 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.3: 3 residues within 4Å: Chain B: G.87, F.90, M.194 No protein-ligand interaction detected (PLIP) PEG.6: 3 residues within 4Å: Chain D: G.87, F.90, M.194 No protein-ligand interaction detected (PLIP) PEG.9: 3 residues within 4Å: Chain F: G.87, F.90, M.194 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, C. et al., Structure and mutation analysis of the hexameric P4 from Pseudomonas aeruginosa phage phiYY. Int.J.Biol.Macromol. (2022)

Release Date

2022-03-23

Peptides

Packaging NTPase: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
G

B
H

C
G

D
H

E
G

F
H

Packaging NTPase

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