SMTL ID : 7ety.1

Crystal structure of bifunctional indole-3-glycerol phosphate synthase / phosphoribosylanthranilate isomerase (trpC) from Corynebacterium glutamicum in complex with reduced 1-(O-carboxyphenylamino)-1-deoxyribulose 5-phosphate (rCdRP)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.21 Å

Oligo State

homo-dimer

Ligands

4 x 137: 1-(O-CARBOXY-PHENYLAMINO)-1-DEOXY-D-RIBULOSE-5-PHOSPHATE(Non-covalent)

137.1: 19 residues within 4Å: Chain A: K.264, C.266, I.288, S.293, R.295, V.317, R.319, Q.336, H.338, D.393, G.397, G.398, S.399, G.400, G.420, G.421, D.439, N.441, S.442 23 PLIP interactions: 23 interactions with chain A Hydrophobic interactions: A:I.288, A:I.288, A:V.317, A:R.319 Hydrogen bonds: A:K.264, A:S.293, A:Q.336, A:D.393, A:G.398, A:G.400, A:G.420, A:G.421, A:D.439, A:N.441, A:N.441, A:S.442, A:S.442 Water bridges: A:S.399, A:S.399, A:I.422, A:G.443 Salt bridges: A:R.295 pi-Stacking: A:H.338 137.2: 20 residues within 4Å: Chain A: I.13, E.59, K.61, S.64, P.65, S.66, F.99, K.120, F.122, R.192, L.194, L.197, E.220, S.221, G.222, R.224, L.240, V.241, G.242, S.243 31 PLIP interactions: 31 interactions with chain A Hydrophobic interactions: A:I.13, A:P.65, A:F.122, A:L.194, A:L.197 Hydrogen bonds: A:K.61, A:K.61, A:S.66, A:K.120, A:K.120, A:R.192, A:G.222, A:G.242, A:S.243, A:S.243, A:S.243 Water bridges: A:S.64, A:S.64, A:R.192, A:S.221, A:S.221, A:S.221, A:R.224, A:S.243, A:S.243, A:Q.244 Salt bridges: A:K.61, A:K.61, A:R.192, A:R.224 pi-Stacking: A:F.99 137.10: 15 residues within 4Å: Chain B: K.264, C.266, I.288, S.293, R.295, V.317, R.319, Q.336, H.338, A.419, G.421, I.422, D.439, N.441, S.442 16 PLIP interactions: 16 interactions with chain B Hydrophobic interactions: B:I.288, B:I.288, B:V.317 Hydrogen bonds: B:K.264, B:Q.336, B:G.421, B:I.422, B:D.439, B:N.441, B:N.441, B:S.442, B:S.442, B:S.442 Water bridges: B:G.443 Salt bridges: B:R.295 pi-Stacking: B:H.338 137.11: 19 residues within 4Å: Chain B: I.13, E.59, K.61, S.64, P.65, S.66, F.99, K.120, R.192, L.194, L.197, E.220, S.221, G.222, R.224, L.240, V.241, G.242, S.243 29 PLIP interactions: 29 interactions with chain B Hydrophobic interactions: B:I.13, B:P.65, B:L.194, B:L.197 Hydrogen bonds: B:K.61, B:K.61, B:S.66, B:K.120, B:K.120, B:G.222, B:G.242, B:S.243, B:S.243 Water bridges: B:N.190, B:R.192, B:R.192, B:R.192, B:R.192, B:S.221, B:V.223, B:R.224, B:S.243, B:S.243, B:Q.244 Salt bridges: B:K.61, B:K.61, B:R.192, B:R.224 pi-Stacking: B:F.99

12 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 7 residues within 4Å: Chain A: R.133, Y.134, G.136 Chain B: G.460, L.463, K.464 Ligands: GOL.4 3 PLIP interactions: 1 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:G.460, A:R.133, A:R.133 GOL.4: 8 residues within 4Å: Chain A: K.38, S.39, T.40, R.41, R.133, G.136, D.138 Ligands: GOL.3 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:K.38, A:T.40, A:T.40, A:R.41, A:R.133, A:R.133 GOL.5: 7 residues within 4Å: Chain A: T.269, P.294, T.452, A.454, G.455, A.456 Ligands: GOL.6 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.269, A:P.294, A:T.452 GOL.6: 3 residues within 4Å: Chain A: T.452, W.453 Ligands: GOL.5 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.452, A:W.453 GOL.7: 7 residues within 4Å: Chain A: A.63, M.69, P.96, D.97, R.98, F.99, G.100 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.97, A:G.100 GOL.8: 5 residues within 4Å: Chain A: Y.74, H.105 Chain B: P.271, S.272, Q.275 4 PLIP interactions: 3 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:Q.275, B:Q.275 Water bridges: B:S.272, A:G.100 GOL.9: 6 residues within 4Å: Chain A: P.271, S.272, Q.275 Chain B: E.72, Y.74, H.105 4 PLIP interactions: 2 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:Y.74, A:Q.275, A:Q.275 Water bridges: B:E.72 GOL.12: 6 residues within 4Å: Chain A: G.460 Chain B: P.37, R.133, Y.134, G.136 Ligands: GOL.13 4 PLIP interactions: 3 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:R.133, B:R.133, B:Y.134, A:G.460 GOL.13: 6 residues within 4Å: Chain B: S.39, T.40, R.41, R.133, D.138 Ligands: GOL.12 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:T.40, B:R.41, B:R.133, B:R.133, B:G.136 GOL.14: 4 residues within 4Å: Chain B: P.294, R.295, E.445, G.455 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:E.445 GOL.15: 5 residues within 4Å: Chain B: V.146, L.147, D.148, E.151 Ligands: GOL.16 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:V.146, B:D.148 GOL.16: 6 residues within 4Å: Chain B: R.18, I.124, V.146, L.147, E.151 Ligands: GOL.15 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:R.18, B:R.18, B:E.151 Water bridges: B:V.146

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Park, W. et al., Crystal Structure and Functional Characterization of the Bifunctional N -(5'-Phosphoribosyl)anthranilate Isomerase-indole-3-glycerol-phosphate Synthase from Corynebacterium glutamicum. J.Agric.Food Chem. (2021)

Release Date

2022-05-11

Peptides

Tryptophan biosynthesis protein TrpCF: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Tryptophan biosynthesis protein TrpCF

Related Entries With Identical Sequence