SMTL ID : 7eu2.1 (1 other biounit)

Complex structure of HLA0201 with recognizing SARS-CoV-2 epitope S1

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

hetero-1-1-mer

Ligands

1 x LYS- ILE- ALA- ASP- TYR- ASN- TYR- LYS- LEU: SARS-CoV-2 T-cell Epitope S1(Non-covalent)

LYS-ILE-ALA-ASP-TYR-ASN-TYR-LYS-LEU.1: 25 residues within 4Å: Chain A: M.10, Y.12, Y.64, E.68, R.70, K.71, V.72, A.74, H.75, T.78, V.81, D.82, T.85, L.86, Y.89, R.102, Y.104, T.148, K.151, W.152, V.157, Q.160, Y.164, W.172, Y.176 23 PLIP interactions: 23 interactions with chain A Hydrophobic interactions: A:Y.12, A:K.71, A:V.81, A:D.82, A:L.86, A:W.152, A:V.157, A:Q.160, A:Y.164 Hydrogen bonds: A:Y.12, A:E.68, A:K.71, A:H.75, A:H.75, A:D.82, A:R.102, A:R.102, A:Y.104, A:K.151, A:Y.176, A:Y.176 Salt bridges: A:R.70, A:K.71

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, H. et al., Profiling CD8 + T cell epitopes of COVID-19 convalescents reveals reduced cellular immune responses to SARS-CoV-2 variants. Cell Rep (2021)

Release Date

2021-08-25

Peptides

MHC class I antigen: A
Beta-2-microglobulin: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

MHC class I antigen

Beta-2-microglobulin

Related Entries With Identical Sequence