SMTL ID : 7eu5.2 (3 other biounits)

Co-crystal structure of Human Nicotinamide N-methyltransferase (NNMT) with tricyclic small molecule inhibitor JBSNF-000107

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.73 Å

Oligo State

monomer

Ligands

1 x SAH: S-ADENOSYL-L-HOMOCYSTEINE(Non-covalent)

SAH.1: 23 residues within 4Å: Chain A: Y.31, Y.40, Y.45, G.83, S.84, G.85, T.87, Y.89, Q.90, D.105, Y.106, S.107, N.110, C.161, D.162, V.163, T.183, L.184, C.185, A.188, A.189, Y.224 Ligands: JDL.2 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:Y.40, A:G.83, A:T.87, A:Q.90, A:D.105, A:Y.106, A:S.107, A:N.110, A:D.162, A:V.163 pi-Stacking: A:Y.31

1 x JDL: 6-fluoranyl-10-methyl-1,10-diazatricyclo[6.3.1.0^{4,12}]dodeca-4,6,8(12)-trien-11-imine(Non-covalent)

JDL.2: 13 residues within 4Å: Chain A: Y.40, Y.44, Y.45, L.184, A.188, A.218, S.221, Y.224, S.233, Y.262, A.267, N.269 Ligands: SAH.1 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:A.218, A:Y.224, A:Y.262, A:A.267 Hydrogen bonds: A:L.184 pi-Stacking: A:Y.224 pi-Cation interactions: A:Y.44, A:Y.224

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ruf, S. et al., Novel tricyclic small molecule inhibitors of Nicotinamide N-methyltransferase for the treatment of metabolic disorders. Sci Rep (2022)

Release Date

2022-05-18

Peptides

Nicotinamide N-methyltransferase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Nicotinamide N-methyltransferase

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