SMTL ID : 7ewa.3 (2 other biounits)

GDP-bound KRAS G12D in complex with TH-Z827

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.25 Å

Oligo State

monomer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 3 residues within 4Å: Chain A: S.18, D.58 Ligands: GNP.2 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:S.18, H2O.1, H2O.1, H2O.1

1 x GNP: PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER(Non-covalent)

GNP.2: 18 residues within 4Å: Chain A: A.12, D.13, G.14, V.15, G.16, K.17, S.18, A.19, T.59, G.61, N.117, K.118, D.120, L.121, S.146, A.147, K.148 Ligands: MG.1 18 PLIP interactions: 18 interactions with chain A Hydrogen bonds: A:G.14, A:V.15, A:G.16, A:K.17, A:K.17, A:K.17, A:S.18, A:A.19, A:G.61, A:N.117, A:K.118, A:K.118, A:S.146, A:A.147, A:K.148, A:K.148 Salt bridges: A:D.120 pi-Cation interactions: A:K.118

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mao, Z. et al., KRAS(G12D) can be targeted by potent inhibitors via formation of salt bridge. Cell Discov (2022)

Release Date

2021-12-29

Peptides

Isoform 2B of GTPase KRas: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

Isoform 2B of GTPase KRas

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