SMTL ID : 7eya.1

Local CryoEM structure of the SARS-CoV-2 S6PV2 in complex with BD-804 Fab

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-mer

Ligands

1 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.1: 4 residues within 4Å: Chain B: W.2, S.25, Q.26 Chain D: N.165 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:S.25

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Du, S. et al., Structures of SARS-CoV-2 B.1.351 neutralizing antibodies provide insights into cocktail design against concerning variants. Cell Res. (2021)

Release Date

2021-09-08

Peptides

Spike glycoprotein: A
BD-804L: B
BD-804H: C
Spike glycoprotein: D

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
R

B
L

C
H

D
N

Spike glycoprotein

BD-804L

BD-804H

Spike glycoprotein

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