SMTL ID : 7eyo.1

Crystal structure of leech hyaluronidase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

monomer

Ligands

2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 8 residues within 4Å: Chain A: T.101, I.102, T.103, R.104, R.105, Y.145, M.151, N.191 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.101, A:R.105 NAG-NAG.2: 5 residues within 4Å: Chain A: N.256, G.305, T.306, K.307, Y.343 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Y.343

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 9 residues within 4Å: Chain A: L.76, F.77, F.78, F.135, D.136, L.137, N.138, E.159, A.160 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:F.78, A:D.136, A:N.138 Water bridges: A:F.78, A:N.138, A:N.138, A:E.159, A:A.160 GOL.4: 5 residues within 4Å: Chain A: D.34, G.70, T.71, Y.251, E.297 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:D.34, A:T.71, A:T.71, A:Y.251 Water bridges: A:R.67, A:N.182, A:N.182, A:E.183, A:E.183, A:N.303

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Huang, H. et al., Structure and cleavage pattern of a hyaluronate 3-glycanohydrolase in the glycoside hydrolase 79 family. Carbohydr Polym (2022)

Release Date

2022-05-25

Peptides

Hyaluronoglucuronidase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Hyaluronoglucuronidase