SMTL ID : 7eys.1 (1 other biounit)

Complex structure of SptF with Fe, alpha-ketoglutarate, and andiconin D

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

homo-dimer

Ligands

1 x AKG: 2-OXOGLUTARIC ACID(Non-covalent)

AKG.1: 11 residues within 4Å: Chain A: Q.70, L.114, Q.123, H.126, D.128, T.163, H.203, A.205, R.214 Ligands: 0CC.2, FE2.3 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:A.205 Hydrogen bonds: A:Q.70, A:Q.123, A:T.163 Salt bridges: A:H.126, A:R.214

1 x 0CC: Andiconin D(Non-covalent)

0CC.2: 18 residues within 4Å: Chain A: H.59, I.61, N.63, V.64, Q.70, N.109, G.110, G.111, S.112, L.114, H.126, D.128, F.131, N.148, A.218, S.220, I.229 Ligands: AKG.1 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:I.61, A:V.64, A:N.109, A:F.131, A:I.229, A:I.229 Hydrogen bonds: A:N.63, A:S.112, A:N.148

1 x FE2: FE (II) ION(Non-covalent)

FE2.3: 4 residues within 4Å: Chain A: H.126, D.128, H.203 Ligands: AKG.1 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.126, A:D.128, A:H.203, H2O.2

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tao, H. et al., Molecular insights into the unusually promiscuous and catalytically versatile Fe(II)/ alpha-ketoglutarate-dependent oxygenase SptF. Nat Commun (2022)

Release Date

2022-04-20

Peptides

2-oxoglutarate/Fe(II)-dependent dioxygenase SptF: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

2-oxoglutarate/Fe(II)-dependent dioxygenase SptF

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