SMTL ID : 7eyu.1

Fe(II)/(alpha)ketoglutarate-dependent dioxygenase SptF-N65T mutant with andiconin D

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.05 Å

Oligo State

homo-dimer

Ligands

1 x OGA: N-OXALYLGLYCINE(Non-covalent)

OGA.1: 11 residues within 4Å: Chain A: Q.70, L.114, Q.123, H.126, D.128, T.163, H.203, A.205, R.214 Ligands: 0CC.2, FE2.3 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Q.70, A:Q.123, A:T.163 Salt bridges: A:H.126, A:R.214

1 x 0CC: Andiconin D(Non-covalent)

0CC.2: 16 residues within 4Å: Chain A: H.59, I.61, T.63, Q.70, N.109, G.110, G.111, S.112, H.126, D.128, F.131, N.148, A.218, S.220, I.229 Ligands: OGA.1 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:I.61, A:F.131, A:F.131, A:I.229 Hydrogen bonds: A:T.63, A:S.112, A:S.220

2 x FE2: FE (II) ION(Non-covalent)

FE2.3: 4 residues within 4Å: Chain A: H.126, D.128, H.203 Ligands: OGA.1 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.126, A:D.128, A:H.203, H2O.3 FE2.4: 3 residues within 4Å: Chain B: H.126, D.128, H.203 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:H.126, B:D.128, B:H.203

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tao, H. et al., Molecular insights into the unusually promiscuous and catalytically versatile Fe(II)/ alpha-ketoglutarate-dependent oxygenase SptF. Nat Commun (2022)

Release Date

2022-04-20

Peptides

2-oxoglutarate/Fe(II)-dependent dioxygenase SptF: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
A

2-oxoglutarate/Fe(II)-dependent dioxygenase SptF