SMTL ID : 7eyx.1

Crystal structure of Mg-free KRAS-G12D bound to GDP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.82 Å

Oligo State

monomer

Ligands

1 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.1: 21 residues within 4Å: Chain A: A.11, D.12, G.13, V.14, G.15, K.16, S.17, A.18, F.28, V.29, D.30, E.31, Y.32, A.59, N.116, K.117, D.119, L.120, S.145, A.146, K.147 23 PLIP interactions: 23 interactions with chain A Hydrogen bonds: A:G.13, A:V.14, A:G.15, A:K.16, A:S.17, A:S.17, A:A.18, A:D.30, A:D.30, A:N.116, A:K.117, A:K.117, A:S.145, A:S.145, A:A.146, A:K.147 Water bridges: A:K.16, A:D.30 Salt bridges: A:K.16, A:D.119 pi-Stacking: A:F.28, A:F.28 pi-Cation interactions: A:K.117

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fei, Z., Crystal structure of Mg-free KRAS-G12D bound to GDP. To Be Published

Release Date

2021-06-16

Peptides

Isoform 2B of GTPase KRas: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Isoform 2B of GTPase KRas

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