SMTL ID : 7eze.1 (1 other biounit)

Thorarchaeota Rab GTP-gamma-S/Mg2+ (soak)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

monomer

Ligands

1 x GSP: 5'-GUANOSINE-DIPHOSPHATE-MONOTHIOPHOSPHATE(Non-covalent)

GSP.1: 18 residues within 4Å: Chain A: D.14, G.15, A.16, V.17, G.18, K.19, T.20, A.21, F.31, T.33, N.121, K.122, D.124, L.125, S.151, A.152, L.153 Ligands: MG.2 21 PLIP interactions: 21 interactions with chain A Hydrogen bonds: A:A.16, A:V.17, A:G.18, A:K.19, A:K.19, A:K.19, A:T.20, A:T.20, A:A.21, A:N.121, A:K.122, A:S.151, A:A.152, A:L.153 Water bridges: A:T.20, A:D.32, A:K.122 Salt bridges: A:K.19, A:D.124 pi-Stacking: A:F.31, A:F.31

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 2 residues within 4Å: Chain A: T.20 Ligands: GSP.1 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:T.20, H2O.1, H2O.2, H2O.4

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tran, L.T. et al., The eukaryotic-like characteristics of small GTPase, roadblock and TRAPPC3 proteins from Asgard archaea. Commun Biol (2024)

Release Date

2022-06-08

Peptides

Thorarchaeota Rab: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Thorarchaeota Rab

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