SMTL ID : 7ezl.1

Rice L-galactose dehydrogenase (holo form)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)

NAD.1: 26 residues within 4Å: Chain A: G.27, A.28, S.29, P.30, L.31, D.59, K.92, D.130, T.162, G.163, L.185, Y.187, A.214, S.215, P.216, L.217, A.218, M.219, T.256, L.273, V.274, G.275, N.277, Q.281, E.284, N.285 20 PLIP interactions: 20 interactions with chain A Hydrophobic interactions: A:Y.187, A:Y.187 Hydrogen bonds: A:S.29, A:L.31, A:D.59, A:D.59, A:T.162, A:T.162, A:G.163, A:S.215, A:L.217, A:M.219, A:G.220, A:G.275, A:N.277, A:Q.281, A:N.285, A:N.285 Water bridges: A:N.254, A:N.254

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 4 residues within 4Å: Chain A: D.135, D.137, Y.171, A.324 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.135, A:D.137, H2O.3

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Momma, M. et al., Crystal structure of rice L-galactose dehydrogenase. To Be Published

Release Date

2021-06-23

Peptides

L-galactose dehydrogenase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

L-galactose dehydrogenase

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