SMTL ID : 7ezq.1

Complex structure of AtHPPD with inhibitor Y15832

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.89 Å

Oligo State

homo-dimer

Ligands

2 x 0O0: 6-(1,3-dimethyl-5-oxidanyl-pyrazol-4-yl)carbonyl-1,5-dimethyl-3-(2-methylphenyl)quinazoline-2,4-dione(Non-covalent)

0O0.1: 16 residues within 4Å: Chain A: H.198, V.200, V.241, P.252, Q.265, H.280, M.307, F.353, F.364, E.366, F.391, G.392, N.395, F.396, L.399 Ligands: CO.2 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:Q.265, A:F.353, A:F.353, A:F.364, A:F.396, A:F.396 Water bridges: A:S.239, A:Q.279, A:Q.351 0O0.3: 16 residues within 4Å: Chain B: H.198, V.200, V.241, P.252, Q.265, H.280, M.307, F.353, F.364, E.366, F.391, G.392, N.395, F.396, L.399 Ligands: CO.4 9 PLIP interactions: 9 interactions with chain B Hydrophobic interactions: B:Q.265, B:F.353, B:F.353, B:F.364, B:F.396, B:F.396 Water bridges: B:S.239, B:Q.279, B:Q.351

2 x CO: COBALT (II) ION(Non-covalent)

CO.2: 4 residues within 4Å: Chain A: H.198, H.280, E.366 Ligands: 0O0.1 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.198, A:H.280, A:E.366, H2O.2 CO.4: 4 residues within 4Å: Chain B: H.198, H.280, E.366 Ligands: 0O0.3 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.198, B:H.280, B:E.366, H2O.10

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lin, H.Y. et al., Complex structure of AtHPPD with inhibitor Y18093. To Be Published

Release Date

2022-06-01

Peptides

4-hydroxyphenylpyruvate dioxygenase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

4-hydroxyphenylpyruvate dioxygenase