SMTL ID : 7f0w.1

Crystal structure of KRAS-G12D bound to GDP with switch 1 open conformation

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.39 Å

Oligo State

monomer

Ligands

1 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.1: 15 residues within 4Å: Chain A: A.11, D.12, G.13, V.14, G.15, K.16, S.17, A.18, N.116, K.117, D.119, L.120, S.145, A.146, K.147 20 PLIP interactions: 20 interactions with chain A Hydrogen bonds: A:A.11, A:D.12, A:G.13, A:V.14, A:G.15, A:K.16, A:S.17, A:A.18, A:N.116, A:K.117, A:K.117, A:S.145, A:A.146, A:K.147 Water bridges: A:S.17, A:S.17, A:D.57 Salt bridges: A:K.16, A:D.119 pi-Cation interactions: A:K.117

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 1 residues within 4Å: Chain A: A.66 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, F., Crystal structure of KRAS-G12D bound to GDP with switch 1 open conformation. To Be Published

Release Date

2021-06-23

Peptides

Isoform 2B of GTPase KRas: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Isoform 2B of GTPase KRas

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