SMTL ID : 7f36.1

TacT complexed with acetyl-glycyl-tRNAGly

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.10 Å

Oligo State

homo-tetramer

Ligands

41 x CA: CALCIUM ION(Non-covalent)(Non-functional Binders)

CA.1: 3 residues within 4Å: Chain A: V.20, D.95, S.97 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:S.97 CA.2: 2 residues within 4Å: Chain B: D.95, S.97 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:S.97 CA.3: 2 residues within 4Å: Chain C: G.3, G.4 No protein-ligand interaction detected (PLIP) CA.4: 4 residues within 4Å: Chain C: A.6, A.7, U.8, A.14 No protein-ligand interaction detected (PLIP) CA.5: 1 residues within 4Å: Chain C: U.65 No protein-ligand interaction detected (PLIP) CA.6: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) CA.7: 4 residues within 4Å: Chain C: U.20, A.21, G.59, U.60 No protein-ligand interaction detected (PLIP) CA.8: 2 residues within 4Å: Chain C: C.48, C.50 No protein-ligand interaction detected (PLIP) CA.9: 2 residues within 4Å: Chain C: G.46, U.47 No protein-ligand interaction detected (PLIP) CA.10: 4 residues within 4Å: Chain C: U.17, G.19, G.59, U.60 No protein-ligand interaction detected (PLIP) CA.11: 1 residues within 4Å: Chain C: G.45 No protein-ligand interaction detected (PLIP) CA.12: 2 residues within 4Å: Chain C: C.31, U.32 No protein-ligand interaction detected (PLIP) CA.13: 3 residues within 4Å: Chain C: U.47, G.49, C.50 No protein-ligand interaction detected (PLIP) CA.14: 2 residues within 4Å: Chain C: U.8, U.12 No protein-ligand interaction detected (PLIP) CA.15: 1 residues within 4Å: Chain C: U.8 No protein-ligand interaction detected (PLIP) CA.16: 3 residues within 4Å: Chain D: Q.55, D.95, S.97 1 PLIP interactions: 1 interactions with chain D Metal complexes: D:S.97 CA.17: 4 residues within 4Å: Chain E: E.18, V.20, D.95, S.97 1 PLIP interactions: 1 interactions with chain E Metal complexes: E:S.97 CA.18: 3 residues within 4Å: Chain F: A.7, U.8, A.14 No protein-ligand interaction detected (PLIP) CA.19: 2 residues within 4Å: Chain F: U.8, U.12 No protein-ligand interaction detected (PLIP) CA.20: 3 residues within 4Å: Chain F: G.19, G.59, U.60 No protein-ligand interaction detected (PLIP) CA.21: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) CA.22: 3 residues within 4Å: Chain F: U.20, G.59, U.60 No protein-ligand interaction detected (PLIP) CA.23: 1 residues within 4Å: Chain F: U.65 No protein-ligand interaction detected (PLIP) CA.24: 3 residues within 4Å: Chain G: A.7, U.8, A.14 No protein-ligand interaction detected (PLIP) CA.25: 3 residues within 4Å: Chain G: A.21, G.59, U.60 No protein-ligand interaction detected (PLIP) CA.26: 3 residues within 4Å: Chain G: A.9, G.10, C.11 No protein-ligand interaction detected (PLIP) CA.27: 1 residues within 4Å: Chain G: G.44 No protein-ligand interaction detected (PLIP) CA.28: 2 residues within 4Å: Chain G: U.47, C.50 No protein-ligand interaction detected (PLIP) CA.29: 4 residues within 4Å: Chain G: U.8, A.9, C.11, U.12 No protein-ligand interaction detected (PLIP) CA.30: 1 residues within 4Å: Chain G: G.3 No protein-ligand interaction detected (PLIP) CA.31: 3 residues within 4Å: Chain G: C.25, G.39, G.40 No protein-ligand interaction detected (PLIP) CA.33: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) CA.34: 4 residues within 4Å: Chain H: G.19, A.21, G.59, U.60 No protein-ligand interaction detected (PLIP) CA.35: 3 residues within 4Å: Chain H: U.47, C.48, C.50 No protein-ligand interaction detected (PLIP) CA.36: 2 residues within 4Å: Chain H: A.9, G.10 No protein-ligand interaction detected (PLIP) CA.37: 4 residues within 4Å: Chain H: A.6, A.7, U.8, A.14 No protein-ligand interaction detected (PLIP) CA.38: 2 residues within 4Å: Chain H: C.27, A.38 No protein-ligand interaction detected (PLIP) CA.39: 2 residues within 4Å: Chain H: G.3, G.4 No protein-ligand interaction detected (PLIP) CA.40: 2 residues within 4Å: Chain H: G.64, U.65 No protein-ligand interaction detected (PLIP) CA.41: 2 residues within 4Å: Chain H: U.8, U.12 No protein-ligand interaction detected (PLIP) CA.42: 3 residues within 4Å: Chain H: C.25, G.39, G.40 No protein-ligand interaction detected (PLIP)

1 x AAC: ACETYLAMINO-ACETIC ACID(Non-covalent)

AAC.32: 3 residues within 4Å: Chain B: D.82 Chain H: C.75, A.76 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yashiro, Y. et al., Molecular basis of glycyl-tRNAGly acetylation by TacT from Salmonella Typhimurium. Cell Rep (2021)

Release Date

2021-12-22

Peptides

N-acetyltransferase domain-containing protein: ABDE

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

D
D

E
C

N-acetyltransferase domain-containing protein