SMTL ID : 7f3j.3 (3 other biounits)

Crystal structure of human YBX2 CSD in complex with m5C RNA in space group P1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

monomer

Ligands

1 x U- C- A- U- 5MC: RNA (5'-R(*UP*CP*AP*UP*(5MC))-3')(Non-covalent)

U-C-A-U-5MC.1: 14 residues within 4Å: Chain A: K.15, W.16, F.17, N.18, V.19, R.20, N.21, Y.23, F.25, D.34, F.36, K.69, E.72, Y.89 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:Y.89 Hydrogen bonds: A:F.17, A:V.19, A:R.20 Water bridges: A:N.18, A:D.56, A:D.56 pi-Stacking: A:Y.89

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, Y. et al., Crystal structure of human YBX2 CSD in complex with m5C RNA in space group P1. To Be Published

Release Date

2022-06-22

Peptides

Y-box-binding protein 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
E

Y-box-binding protein 2

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