SMTL ID : 7f3l.1

Crystal structure of human YBX2 CSD in complex with m5C RNA in space group P62

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.88 Å

Oligo State

monomer

Ligands

1 x C- A- U- 5MC: RNA (5'-R(P*CP*AP*UP*(5MC))-3')(Non-covalent)

C-A-U-5MC.1: 13 residues within 4Å: Chain A: K.15, W.16, N.18, N.21, Y.23, F.25, D.34, F.36, H.38, T.40, K.69, G.70, A.71 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.18, A:N.21 pi-Stacking: A:W.16, A:W.16

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, Y. et al., Crystal structure of human YBX2 CSD in complex with m5C RNA in space group P62. To Be Published

Release Date

2022-06-22

Peptides

Y-box-binding protein 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Y-box-binding protein 2