SMTL ID : 7f3p.1

Crystal structure of a nadp-dependent alcohol dehydrogenase mutant in apo form

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

homo-tetramer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: C.43, S.45, H.65, W.116, D.156 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:C.43, A:H.65, A:D.156 ZN.2: 5 residues within 4Å: Chain B: C.43, S.45, H.65, E.66, D.156 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:C.43, B:H.65, B:D.156 ZN.4: 5 residues within 4Å: Chain C: C.43, S.45, H.65, D.156 Ligands: NAP.3 3 PLIP interactions: 3 interactions with chain C Metal complexes: C:C.43, C:H.65, C:D.156 ZN.5: 4 residues within 4Å: Chain D: C.43, H.65, D.156, M.157 3 PLIP interactions: 3 interactions with chain D Metal complexes: D:C.43, D:H.65, D:D.156

1 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.3: 24 residues within 4Å: Chain C: T.44, S.45, H.48, W.116, D.156, M.157, T.160, G.180, I.181, G.182, P.183, V.184, S.205, R.206, Y.224, A.248, G.249, G.250, V.271, N.272, Y.273, L.300, K.346 Ligands: ZN.4 20 PLIP interactions: 20 interactions with chain C Hydrophobic interactions: C:T.160, C:V.184 Hydrogen bonds: C:T.44, C:H.48, C:I.181, C:I.181, C:G.182, C:V.184, C:S.205, C:R.206, C:G.250, C:N.272, C:Y.273 Water bridges: C:T.44, C:N.251, C:N.251 Salt bridges: C:R.206, C:R.206, C:K.346 pi-Stacking: C:Y.224

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Qu, G. et al., Unlocking the Stereoselectivity and Substrate Acceptance of Enzymes: Proline-Induced Loop Engineering Test. Angew.Chem.Int.Ed.Engl. (2022)

Release Date

2021-10-27

Peptides

NADP-dependent isopropanol dehydrogenase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

NADP-dependent isopropanol dehydrogenase