SMTL ID : 7f4x.1

Joint neutron and X-ray crystal structure of the nucleotide-binding domain of Hsp72 in complex with ADP

Coordinates

PDB Format Compare

Method

NEUTRON DIFFRACTION 2.20 Å

Oligo State

monomer

Ligands

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 22 residues within 4Å: Chain A: G.10, T.11, T.12, Y.13, T.35, G.199, G.200, G.201, G.228, E.229, E.266, K.269, R.270, S.273, G.336, G.337, S.338, R.340, I.341, D.364 Ligands: MG.2, NA.3 26 PLIP interactions: 26 interactions with chain A Hydrogen bonds: A:T.11, A:T.12, A:T.12, A:Y.13, A:G.200, A:G.228, A:E.229, A:E.266, A:E.266, A:K.269, A:K.269, A:R.270, A:R.270, A:R.270, A:R.270, A:S.273, A:G.337, A:R.340 Water bridges: A:D.8, A:T.11, A:Y.13, A:G.201, A:T.202, A:T.202, A:G.336, A:S.338

1 x MG: MAGNESIUM ION(Non-functional Binders)

MG.2: 2 residues within 4Å: Ligands: ADP.1, NA.3 No protein-ligand interaction detected (PLIP)

1 x NA: SODIUM ION(Non-functional Binders)

NA.3: 6 residues within 4Å: Chain A: D.8, G.10, Y.13, S.14 Ligands: ADP.1, MG.2 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.8

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yokoyama, T. et al., Neutron crystallographic analysis of the nucleotide-binding domain of Hsp72 in complex with ADP. Iucrj (2022)

Release Date

2022-06-29

Peptides

Heat shock 70 kDa protein 1B: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Heat shock 70 kDa protein 1B