SMTL ID : 7f50.1

X-ray crystal structure of Y149A mutated Hsp72-NBD in complex with AMPPnP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

2 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 2 residues within 4Å: Chain A: D.8 Ligands: ANP.4 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.8, H2O.3, H2O.5, H2O.5 MG.2: 3 residues within 4Å: Chain A: T.202, D.204 Ligands: ANP.4 6 PLIP interactions: 2 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:T.202, A:D.204, H2O.1, H2O.3, H2O.7, H2O.8

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 4 residues within 4Å: Chain A: N.29, D.30, Q.31, K.124 Ligand excluded by PLIP

1 x ANP: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER(Non-covalent)

ANP.4: 21 residues within 4Å: Chain A: G.10, T.11, T.12, Y.13, G.199, G.200, G.201, T.202, G.228, E.266, K.269, R.270, S.273, G.336, G.337, S.338, R.340, I.341, D.364 Ligands: MG.1, MG.2 26 PLIP interactions: 26 interactions with chain A Hydrogen bonds: A:T.11, A:T.11, A:T.12, A:T.12, A:Y.13, A:G.199, A:G.200, A:G.201, A:T.202, A:T.202, A:E.266, A:E.266, A:K.269, A:R.270, A:S.273, A:S.273, A:G.337 Water bridges: A:E.173, A:E.173, A:D.197, A:T.202, A:T.202, A:R.270, A:R.340, A:D.364, A:D.364

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yokoyama, T. et al., Neutron crystallographic analysis of the nucleotide-binding domain of Hsp72 in complex with ADP. Iucrj (2022)

Release Date

2022-06-29

Peptides

Heat shock 70 kDa protein 1B: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Heat shock 70 kDa protein 1B

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