SMTL ID : 7f51.1

Crystal structure of Hst2 in complex with 2'-O-Benzoyl ADP Ribose

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.98 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.136, C.139, C.163, C.166 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.136, A:C.139, A:C.163, A:C.166

1 x BA7: [(2R,3R,4R,5R)-5-[[[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxymethyl]-2,4-bis(oxidanyl)oxolan-3-yl] benzoate(Non-covalent)

BA7.2: 24 residues within 4Å: Chain A: G.25, A.26, G.27, T.30, F.37, R.38, F.60, Q.108, I.110, H.128, I.174, V.175, F.177, G.216, T.217, S.218, L.219, V.221, N.241, L.242, E.243, Q.261, Y.262, S.263 25 PLIP interactions: 25 interactions with chain A Hydrophobic interactions: A:F.60, A:I.110, A:H.128, A:I.174, A:F.177 Hydrogen bonds: A:A.26, A:G.27, A:T.30, A:T.30, A:Q.108, A:S.218, A:L.219, A:N.241, A:L.242, A:E.243, A:S.263 Water bridges: A:R.38, A:R.38, A:R.38, A:R.38 Salt bridges: A:R.38, A:R.38, A:H.128 pi-Stacking: A:F.60, A:H.128

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, D. et al., Global profiling of regulatory elements in the histone benzoylation pathway. Nat Commun (2022)

Release Date

2022-03-16

Peptides

NAD-dependent protein deacetylase HST2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

NAD-dependent protein deacetylase HST2

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