SMTL ID : 7f57.1

Kainate-bound GluK2-1xNeto2 complex, at the desensitized state

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-4-1-mer

Ligands

6 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.1: 5 residues within 4Å: Chain A: E.250, Y.251, Y.252, H.253, N.275 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA.2: 4 residues within 4Å: Chain A: R.158, N.378, N.381, T.385 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.158 NAG-NAG-BMA.3: 5 residues within 4Å: Chain B: R.194, N.378, T.380, N.381, T.385 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:R.194 NAG-NAG-BMA.4: 3 residues within 4Å: Chain C: E.250, Y.251, N.275 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA.5: 4 residues within 4Å: Chain C: R.158, R.194, N.378, T.385 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:R.158, C:R.158 NAG-NAG-BMA.6: 8 residues within 4Å: Chain D: D.152, S.154, R.158, N.378, N.381, T.385 Chain E: E.95, S.97 2 PLIP interactions: 1 interactions with chain D, 1 interactions with chain E Hydrogen bonds: D:R.158, E:S.97, D:S.154

11 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.7: 6 residues within 4Å: Chain A: A.422, N.423, T.425, D.426, L.428, I.473 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.425, A:T.425, A:D.426, A:I.473 NAG.8: 2 residues within 4Å: Chain A: Y.271, N.430 No protein-ligand interaction detected (PLIP) NAG.9: 3 residues within 4Å: Chain A: N.749, C.750, N.751 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.749 NAG.10: 2 residues within 4Å: Chain A: N.412, T.414 No protein-ligand interaction detected (PLIP) NAG.11: 3 residues within 4Å: Chain B: E.250, G.273, N.275 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.275 NAG.12: 3 residues within 4Å: Chain B: S.409, N.412, Q.417 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:N.412, B:Q.417 NAG.13: 2 residues within 4Å: Chain C: N.412, T.414 No protein-ligand interaction detected (PLIP) NAG.14: 4 residues within 4Å: Chain C: Y.271, S.429, N.430, R.431 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:N.430 NAG.15: 3 residues within 4Å: Chain C: N.749, C.750, N.751 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:C.750, C:N.751 NAG.16: 3 residues within 4Å: Chain D: H.253, N.275, K.395 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:H.253, D:K.395 NAG.17: 1 residues within 4Å: Chain D: N.412 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

He, L. et al., Kainate receptor modulation by NETO2. Nature (2021)

Release Date

2021-09-29

Peptides

Glutamate receptor ionotropic, kainate 2: ABCD
Neuropilin and tolloid-like protein 2: E

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

Membrane

We predict this structure to be a membrane protein.
Show / Hide

Glutamate receptor ionotropic, kainate 2

Neuropilin and tolloid-like protein 2

Related Entries With Identical Sequence