SMTL ID : 7f5m.1

Crystal structure of Sas5 YEATS domain in complex with H3K27bz peptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

hetero-2-1-mer

Ligands

6 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 1 residues within 4Å: Chain A: S.101 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.101 GOL.2: 3 residues within 4Å: Chain A: D.116, Y.117, T.118 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.118 GOL.3: 4 residues within 4Å: Chain A: R.69, L.70, N.71, S.72 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.69, A:N.71, A:N.71, A:S.72 Water bridges: A:S.72 GOL.4: 1 residues within 4Å: Chain A: K.67 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.67, A:K.67 GOL.5: 5 residues within 4Å: Chain B: S.62, F.63, G.81, W.82, G.83 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:S.62, B:S.62, B:W.82, B:G.83 GOL.6: 3 residues within 4Å: Chain B: R.31, G.81, W.82 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:R.31

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, D. et al., Global profiling of regulatory elements in the histone benzoylation pathway. Nat Commun (2022)

Release Date

2022-03-16

Peptides

Something about silencing protein 5: AB
LYS-GLN-LEU-ALA-SER-LYS-ALA-ALA-ARG-LBZ-SER-ALA-PRO-SER-THR-GLY-GLY-VAL-LYS-TYR: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Something about silencing protein 5

LYS-GLN-LEU-ALA-SER-LYS-ALA-ALA-ARG-LBZ-SER-ALA-PRO-SER-THR-GLY-GLY-VAL-LYS-TYR