SMTL ID : 7f68.1

Crystal structure of N-ras S89D

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.24 Å

Oligo State

monomer

Ligands

1 x GTP: GUANOSINE-5'-TRIPHOSPHATE(Non-covalent)

GTP.1: 25 residues within 4Å: Chain A: A.11, G.12, G.13, V.14, G.15, K.16, S.17, A.18, F.28, V.29, D.30, E.31, Y.32, P.34, T.35, A.59, G.60, N.116, K.117, D.119, L.120, S.145, A.146, K.147 Ligands: MG.2 30 PLIP interactions: 30 interactions with chain A Hydrogen bonds: A:G.13, A:V.14, A:G.15, A:K.16, A:S.17, A:S.17, A:A.18, A:E.31, A:E.31, A:T.35, A:T.35, A:G.60, A:R.61, A:N.116, A:K.117, A:K.117, A:A.146, A:K.147 Water bridges: A:S.17, A:D.30, A:D.33, A:R.61, A:R.61, A:K.147 Salt bridges: A:K.16, A:K.16, A:D.119 pi-Stacking: A:F.28, A:F.28 pi-Cation interactions: A:K.117

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 3 residues within 4Å: Chain A: S.17, T.35 Ligands: GTP.1 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:S.17, A:T.35, H2O.1, H2O.2

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 3 residues within 4Å: Chain A: D.47, R.161, R.164 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.164

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, Y. et al., Crystal structure of N-ras S89D. To Be Published

Release Date

2022-06-29

Peptides

GTPase NRas: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

GTPase NRas