SMTL ID : 7f80.1

Co-crystal structure of Inhibitor compound MA-211 in complex with human PPARdelta LBD

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

homo-dimer

Ligands

2 x 1KF: (3R)-3-methyl-6-[2-[[5-methyl-2-[4-(trifluoromethyl)phenyl]imidazol-1-yl]methyl]phenoxy]hexanoic acid(Non-covalent)

1KF.1: 24 residues within 4Å: Chain A: V.79, F.80, R.82, C.83, Q.84, T.86, T.87, H.121, I.124, F.125, L.128, I.131, L.137, V.139, V.146, L.151, I.161, I.162, K.165, F.166, H.247, M.251, L.267, Y.271 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:F.80, A:Q.84, A:I.124, A:L.128, A:L.128, A:V.139, A:I.161, A:I.162, A:I.162, A:K.165, A:K.165 Hydrogen bonds: A:T.86, A:T.87 Salt bridges: A:H.121, A:H.247 Halogen bonds: A:V.79 1KF.2: 24 residues within 4Å: Chain B: W.62, V.79, F.80, R.82, C.83, Q.84, T.86, T.87, H.121, I.124, F.125, L.128, I.131, L.137, V.139, V.146, I.161, I.162, K.165, F.166, H.247, M.251, L.267, Y.271 17 PLIP interactions: 17 interactions with chain B Hydrophobic interactions: B:F.80, B:Q.84, B:I.124, B:L.128, B:L.128, B:L.137, B:V.139, B:I.161, B:I.162, B:I.162, B:K.165, B:K.165, B:L.267 Hydrogen bonds: B:Y.271 Salt bridges: B:H.121, B:H.247 Halogen bonds: B:V.79

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lakshminarasimhan, A. et al., Co-crystal structure of Inhibitor compound in complex with human PPARdelta LBD. To Be Published

Release Date

2022-07-06

Peptides

Peroxisome proliferator-activated receptor delta: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Peroxisome proliferator-activated receptor delta

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