SMTL ID : 7f92.1

Structure of connexin43/Cx43/GJA1 gap junction intercellular channel in LMNG/CHS detergents at pH ~8.0

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-12-mer

Ligands

132 x C14: TETRADECANE(Non-covalent)(Non-functional Binders)

C14.1: 4 residues within 4Å: Chain A: P.71, F.77 Ligands: C14.2, C14.12 Ligand excluded by PLIP C14.2: 2 residues within 4Å: Chain A: F.169 Ligands: C14.1 Ligand excluded by PLIP C14.3: 6 residues within 4Å: Chain A: P.88, L.91, H.95, S.158, F.165 Ligands: C14.4 Ligand excluded by PLIP C14.4: 1 residues within 4Å: Ligands: C14.3 Ligand excluded by PLIP C14.5: 10 residues within 4Å: Chain A: I.34, E.42, I.82, I.83, S.86, V.87, L.90 Chain B: L.35, T.39 Ligands: C14.15 Ligand excluded by PLIP C14.6: 1 residues within 4Å: Ligands: C14.56 Ligand excluded by PLIP C14.7: 6 residues within 4Å: Chain A: A.6, L.7, L.10, F.97 Chain B: L.11 Ligands: C14.21 Ligand excluded by PLIP C14.8: 3 residues within 4Å: Chain A: F.212 Ligands: C14.9, C14.61 Ligand excluded by PLIP C14.9: 2 residues within 4Å: Ligands: C14.8, C14.10 Ligand excluded by PLIP C14.10: 3 residues within 4Å: Chain A: L.218, V.219 Ligands: C14.9 Ligand excluded by PLIP C14.11: 2 residues within 4Å: Chain A: T.39 Ligands: C14.65 Ligand excluded by PLIP C14.12: 3 residues within 4Å: Chain B: F.212 Ligands: C14.1, C14.13 Ligand excluded by PLIP C14.13: 2 residues within 4Å: Ligands: C14.12, C14.14 Ligand excluded by PLIP C14.14: 3 residues within 4Å: Chain B: L.218, V.219 Ligands: C14.13 Ligand excluded by PLIP C14.15: 2 residues within 4Å: Chain B: T.39 Ligands: C14.5 Ligand excluded by PLIP C14.16: 4 residues within 4Å: Chain B: P.71, F.77 Ligands: C14.17, C14.23 Ligand excluded by PLIP C14.17: 2 residues within 4Å: Chain B: F.169 Ligands: C14.16 Ligand excluded by PLIP C14.18: 5 residues within 4Å: Chain B: P.88, H.95, S.158, F.165 Ligands: C14.19 Ligand excluded by PLIP C14.19: 1 residues within 4Å: Ligands: C14.18 Ligand excluded by PLIP C14.20: 10 residues within 4Å: Chain B: I.34, E.42, I.82, I.83, S.86, V.87, L.90 Chain C: L.35, T.39 Ligands: C14.26 Ligand excluded by PLIP C14.21: 2 residues within 4Å: Chain B: G.8 Ligands: C14.7 Ligand excluded by PLIP C14.22: 6 residues within 4Å: Chain B: A.6, L.7, L.10, F.97 Chain C: L.11 Ligands: C14.32 Ligand excluded by PLIP C14.23: 3 residues within 4Å: Chain C: F.212 Ligands: C14.16, C14.24 Ligand excluded by PLIP C14.24: 2 residues within 4Å: Ligands: C14.23, C14.25 Ligand excluded by PLIP C14.25: 3 residues within 4Å: Chain C: L.218, V.219 Ligands: C14.24 Ligand excluded by PLIP C14.26: 2 residues within 4Å: Chain C: T.39 Ligands: C14.20 Ligand excluded by PLIP C14.27: 4 residues within 4Å: Chain C: P.71, F.77 Ligands: C14.28, C14.34 Ligand excluded by PLIP C14.28: 2 residues within 4Å: Chain C: F.169 Ligands: C14.27 Ligand excluded by PLIP C14.29: 6 residues within 4Å: Chain C: P.88, L.91, H.95, S.158, F.165 Ligands: C14.30 Ligand excluded by PLIP C14.30: 1 residues within 4Å: Ligands: C14.29 Ligand excluded by PLIP C14.31: 10 residues within 4Å: Chain C: I.34, E.42, I.82, I.83, S.86, V.87, L.90 Chain D: L.35, T.39 Ligands: C14.37 Ligand excluded by PLIP C14.32: 1 residues within 4Å: Ligands: C14.22 Ligand excluded by PLIP C14.33: 6 residues within 4Å: Chain C: A.6, L.7, L.10, F.97 Chain D: L.11 Ligands: C14.43 Ligand excluded by PLIP C14.34: 3 residues within 4Å: Chain D: F.212 Ligands: C14.27, C14.35 Ligand excluded by PLIP C14.35: 2 residues within 4Å: Ligands: C14.34, C14.36 Ligand excluded by PLIP C14.36: 3 residues within 4Å: Chain D: L.218, V.219 Ligands: C14.35 Ligand excluded by PLIP C14.37: 2 residues within 4Å: Chain D: T.39 Ligands: C14.31 Ligand excluded by PLIP C14.38: 4 residues within 4Å: Chain D: P.71, F.77 Ligands: C14.39, C14.45 Ligand excluded by PLIP C14.39: 2 residues within 4Å: Chain D: F.169 Ligands: C14.38 Ligand excluded by PLIP C14.40: 6 residues within 4Å: Chain D: P.88, L.91, H.95, S.158, F.165 Ligands: C14.41 Ligand excluded by PLIP C14.41: 1 residues within 4Å: Ligands: C14.40 Ligand excluded by PLIP C14.42: 10 residues within 4Å: Chain D: I.34, E.42, I.82, I.83, S.86, V.87, L.90 Chain E: L.35, T.39 Ligands: C14.48 Ligand excluded by PLIP C14.43: 1 residues within 4Å: Ligands: C14.33 Ligand excluded by PLIP C14.44: 6 residues within 4Å: Chain D: A.6, L.7, L.10, F.97 Chain E: L.11 Ligands: C14.54 Ligand excluded by PLIP C14.45: 3 residues within 4Å: Chain E: F.212 Ligands: C14.38, C14.46 Ligand excluded by PLIP C14.46: 2 residues within 4Å: Ligands: C14.45, C14.47 Ligand excluded by PLIP C14.47: 3 residues within 4Å: Chain E: L.218, V.219 Ligands: C14.46 Ligand excluded by PLIP C14.48: 2 residues within 4Å: Chain E: T.39 Ligands: C14.42 Ligand excluded by PLIP C14.49: 4 residues within 4Å: Chain E: P.71, F.77 Ligands: C14.50, C14.57 Ligand excluded by PLIP C14.50: 2 residues within 4Å: Chain E: F.169 Ligands: C14.49 Ligand excluded by PLIP C14.51: 5 residues within 4Å: Chain E: P.88, H.95, S.158, F.165 Ligands: C14.52 Ligand excluded by PLIP C14.52: 1 residues within 4Å: Ligands: C14.51 Ligand excluded by PLIP C14.53: 10 residues within 4Å: Chain E: I.34, E.42, I.82, I.83, S.86, V.87, L.90 Chain F: L.35, T.39 Ligands: C14.60 Ligand excluded by PLIP C14.54: 2 residues within 4Å: Chain E: G.8 Ligands: C14.44 Ligand excluded by PLIP C14.55: 6 residues within 4Å: Chain E: A.6, L.7, L.10, F.97 Chain F: L.11 Ligands: C14.66 Ligand excluded by PLIP C14.56: 6 residues within 4Å: Chain A: L.11 Chain F: A.6, L.7, L.10, F.97 Ligands: C14.6 Ligand excluded by PLIP C14.57: 3 residues within 4Å: Chain F: F.212 Ligands: C14.49, C14.58 Ligand excluded by PLIP C14.58: 2 residues within 4Å: Ligands: C14.57, C14.59 Ligand excluded by PLIP C14.59: 3 residues within 4Å: Chain F: L.218, V.219 Ligands: C14.58 Ligand excluded by PLIP C14.60: 2 residues within 4Å: Chain F: T.39 Ligands: C14.53 Ligand excluded by PLIP C14.61: 4 residues within 4Å: Chain F: P.71, F.77 Ligands: C14.8, C14.62 Ligand excluded by PLIP C14.62: 2 residues within 4Å: Chain F: F.169 Ligands: C14.61 Ligand excluded by PLIP C14.63: 6 residues within 4Å: Chain F: P.88, L.91, H.95, S.158, F.165 Ligands: C14.64 Ligand excluded by PLIP C14.64: 1 residues within 4Å: Ligands: C14.63 Ligand excluded by PLIP C14.65: 10 residues within 4Å: Chain A: L.35, T.39 Chain F: I.34, E.42, I.82, I.83, S.86, V.87, L.90 Ligands: C14.11 Ligand excluded by PLIP C14.66: 1 residues within 4Å: Ligands: C14.55 Ligand excluded by PLIP C14.67: 4 residues within 4Å: Chain G: P.71, F.77 Ligands: C14.68, C14.78 Ligand excluded by PLIP C14.68: 2 residues within 4Å: Chain G: F.169 Ligands: C14.67 Ligand excluded by PLIP C14.69: 6 residues within 4Å: Chain G: P.88, L.91, H.95, S.158, F.165 Ligands: C14.70 Ligand excluded by PLIP C14.70: 1 residues within 4Å: Ligands: C14.69 Ligand excluded by PLIP C14.71: 10 residues within 4Å: Chain G: I.34, E.42, I.82, I.83, S.86, V.87, L.90 Chain H: L.35, T.39 Ligands: C14.81 Ligand excluded by PLIP C14.72: 1 residues within 4Å: Ligands: C14.122 Ligand excluded by PLIP C14.73: 6 residues within 4Å: Chain G: A.6, L.7, L.10, F.97 Chain H: L.11 Ligands: C14.87 Ligand excluded by PLIP C14.74: 3 residues within 4Å: Chain G: F.212 Ligands: C14.75, C14.127 Ligand excluded by PLIP C14.75: 2 residues within 4Å: Ligands: C14.74, C14.76 Ligand excluded by PLIP C14.76: 3 residues within 4Å: Chain G: L.218, V.219 Ligands: C14.75 Ligand excluded by PLIP C14.77: 2 residues within 4Å: Chain G: T.39 Ligands: C14.131 Ligand excluded by PLIP C14.78: 3 residues within 4Å: Chain H: F.212 Ligands: C14.67, C14.79 Ligand excluded by PLIP C14.79: 2 residues within 4Å: Ligands: C14.78, C14.80 Ligand excluded by PLIP C14.80: 3 residues within 4Å: Chain H: L.218, V.219 Ligands: C14.79 Ligand excluded by PLIP C14.81: 2 residues within 4Å: Chain H: T.39 Ligands: C14.71 Ligand excluded by PLIP C14.82: 4 residues within 4Å: Chain H: P.71, F.77 Ligands: C14.83, C14.89 Ligand excluded by PLIP C14.83: 2 residues within 4Å: Chain H: F.169 Ligands: C14.82 Ligand excluded by PLIP C14.84: 6 residues within 4Å: Chain H: P.88, L.91, H.95, S.158, F.165 Ligands: C14.85 Ligand excluded by PLIP C14.85: 1 residues within 4Å: Ligands: C14.84 Ligand excluded by PLIP C14.86: 10 residues within 4Å: Chain H: I.34, E.42, I.82, I.83, S.86, V.87, L.90 Chain I: L.35, T.39 Ligands: C14.92 Ligand excluded by PLIP C14.87: 1 residues within 4Å: Ligands: C14.73 Ligand excluded by PLIP C14.88: 6 residues within 4Å: Chain H: A.6, L.7, L.10, F.97 Chain I: L.11 Ligands: C14.98 Ligand excluded by PLIP C14.89: 3 residues within 4Å: Chain I: F.212 Ligands: C14.82, C14.90 Ligand excluded by PLIP C14.90: 2 residues within 4Å: Ligands: C14.89, C14.91 Ligand excluded by PLIP C14.91: 3 residues within 4Å: Chain I: L.218, V.219 Ligands: C14.90 Ligand excluded by PLIP C14.92: 2 residues within 4Å: Chain I: T.39 Ligands: C14.86 Ligand excluded by PLIP C14.93: 4 residues within 4Å: Chain I: P.71, F.77 Ligands: C14.94, C14.100 Ligand excluded by PLIP C14.94: 2 residues within 4Å: Chain I: F.169 Ligands: C14.93 Ligand excluded by PLIP C14.95: 6 residues within 4Å: Chain I: P.88, L.91, H.95, S.158, F.165 Ligands: C14.96 Ligand excluded by PLIP C14.96: 1 residues within 4Å: Ligands: C14.95 Ligand excluded by PLIP C14.97: 10 residues within 4Å: Chain I: I.34, E.42, I.82, I.83, S.86, V.87, L.90 Chain J: L.35, T.39 Ligands: C14.103 Ligand excluded by PLIP C14.98: 2 residues within 4Å: Chain I: G.8 Ligands: C14.88 Ligand excluded by PLIP C14.99: 6 residues within 4Å: Chain I: A.6, L.7, L.10, F.97 Chain J: L.11 Ligands: C14.109 Ligand excluded by PLIP C14.100: 3 residues within 4Å: Chain J: F.212 Ligands: C14.93, C14.101 Ligand excluded by PLIP C14.101: 2 residues within 4Å: Ligands: C14.100, C14.102 Ligand excluded by PLIP C14.102: 3 residues within 4Å: Chain J: L.218, V.219 Ligands: C14.101 Ligand excluded by PLIP C14.103: 2 residues within 4Å: Chain J: T.39 Ligands: C14.97 Ligand excluded by PLIP C14.104: 4 residues within 4Å: Chain J: P.71, F.77 Ligands: C14.105, C14.111 Ligand excluded by PLIP C14.105: 2 residues within 4Å: Chain J: F.169 Ligands: C14.104 Ligand excluded by PLIP C14.106: 6 residues within 4Å: Chain J: P.88, L.91, H.95, S.158, F.165 Ligands: C14.107 Ligand excluded by PLIP C14.107: 1 residues within 4Å: Ligands: C14.106 Ligand excluded by PLIP C14.108: 10 residues within 4Å: Chain J: I.34, E.42, I.82, I.83, S.86, V.87, L.90 Chain K: L.35, T.39 Ligands: C14.114 Ligand excluded by PLIP C14.109: 1 residues within 4Å: Ligands: C14.99 Ligand excluded by PLIP C14.110: 6 residues within 4Å: Chain J: A.6, L.7, L.10, F.97 Chain K: L.11 Ligands: C14.120 Ligand excluded by PLIP C14.111: 3 residues within 4Å: Chain K: F.212 Ligands: C14.104, C14.112 Ligand excluded by PLIP C14.112: 2 residues within 4Å: Ligands: C14.111, C14.113 Ligand excluded by PLIP C14.113: 3 residues within 4Å: Chain K: L.218, V.219 Ligands: C14.112 Ligand excluded by PLIP C14.114: 2 residues within 4Å: Chain K: T.39 Ligands: C14.108 Ligand excluded by PLIP C14.115: 4 residues within 4Å: Chain K: P.71, F.77 Ligands: C14.116, C14.123 Ligand excluded by PLIP C14.116: 2 residues within 4Å: Chain K: F.169 Ligands: C14.115 Ligand excluded by PLIP C14.117: 6 residues within 4Å: Chain K: P.88, L.91, H.95, S.158, F.165 Ligands: C14.118 Ligand excluded by PLIP C14.118: 1 residues within 4Å: Ligands: C14.117 Ligand excluded by PLIP C14.119: 10 residues within 4Å: Chain K: I.34, E.42, I.82, I.83, S.86, V.87, L.90 Chain L: L.35, T.39 Ligands: C14.126 Ligand excluded by PLIP C14.120: 1 residues within 4Å: Ligands: C14.110 Ligand excluded by PLIP C14.121: 6 residues within 4Å: Chain K: A.6, L.7, L.10, F.97 Chain L: L.11 Ligands: C14.132 Ligand excluded by PLIP C14.122: 6 residues within 4Å: Chain G: L.11 Chain L: A.6, L.7, L.10, F.97 Ligands: C14.72 Ligand excluded by PLIP C14.123: 3 residues within 4Å: Chain L: F.212 Ligands: C14.115, C14.124 Ligand excluded by PLIP C14.124: 2 residues within 4Å: Ligands: C14.123, C14.125 Ligand excluded by PLIP C14.125: 3 residues within 4Å: Chain L: L.218, V.219 Ligands: C14.124 Ligand excluded by PLIP C14.126: 2 residues within 4Å: Chain L: T.39 Ligands: C14.119 Ligand excluded by PLIP C14.127: 4 residues within 4Å: Chain L: P.71, F.77 Ligands: C14.74, C14.128 Ligand excluded by PLIP C14.128: 2 residues within 4Å: Chain L: F.169 Ligands: C14.127 Ligand excluded by PLIP C14.129: 5 residues within 4Å: Chain L: P.88, H.95, S.158, F.165 Ligands: C14.130 Ligand excluded by PLIP C14.130: 1 residues within 4Å: Ligands: C14.129 Ligand excluded by PLIP C14.131: 10 residues within 4Å: Chain G: L.35, T.39 Chain L: I.34, E.42, I.82, I.83, S.86, V.87, L.90 Ligands: C14.77 Ligand excluded by PLIP C14.132: 2 residues within 4Å: Chain L: G.8 Ligands: C14.121 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lee, H.J. et al., Conformational changes in the human Cx43/GJA1 gap junction channel visualized using cryo-EM. Nat Commun (2023)

Release Date

2022-07-06

Peptides

Gap junction alpha-1 protein: ABCDEFGHIJKL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
I

J
J

K
K

L
L

Membrane

We predict this structure to be a membrane protein.
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Gap junction alpha-1 protein

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