SMTL ID : 7fav.1

Crystal Structure of Rubella Protease

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.64 Å

Oligo State

monomer

Ligands

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 8 residues within 4Å: Chain A: W.133, W.180, A.187, S.188, T.192, G.193, D.194, D.197 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:W.180, A:S.188, A:S.188, A:D.194, A:D.194 Water bridges: A:S.188 GOL.2: 7 residues within 4Å: Chain A: A.163, E.166, A.167, D.172, A.175, L.176, R.179 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:A.163, A:D.172, A:L.176, A:R.179

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 6 residues within 4Å: Chain A: P.156, Y.160, W.180, S.183, H.184, E.201 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.183, A:H.184, A:E.201 Water bridges: A:P.156 EDO.5: 4 residues within 4Å: Chain A: L.36, E.37, R.38, R.92 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.38, A:R.92 Water bridges: A:E.37 EDO.6: 8 residues within 4Å: Chain A: E.18, L.19, S.121, T.122, R.123, H.253, F.254, V.255 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.121, A:T.122, A:H.253 Water bridges: A:R.244 EDO.7: 3 residues within 4Å: Chain A: T.169, H.170, K.171 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:H.170, A:K.171

2 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.4: 9 residues within 4Å: Chain A: I.49, E.51, P.118, V.120, Q.142, S.165, E.166, A.167, R.168 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:A.167 Water bridges: A:R.29 PEG.8: 7 residues within 4Å: Chain A: T.26, R.38, E.76, R.78, D.87, M.88, R.90 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.38, A:E.76, A:R.78, A:D.87

2 x ZN: ZINC ION(Non-covalent)

ZN.9: 4 residues within 4Å: Chain A: C.14, C.17, C.20, H.68 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.14, A:C.17, A:C.20, A:H.68 ZN.10: 5 residues within 4Å: Chain A: C.155, C.158, C.205, C.207, S.208 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.155, A:C.158, A:C.205, A:C.207

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cheong, E.Z.K. et al., Crystal structure of the Rubella virus protease reveals a unique papain-like protease fold. J.Biol.Chem. (2022)

Release Date

2022-07-13

Peptides

Protease/methyltransferase p150: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Protease/methyltransferase p150