SMTL ID : 7fb7.1 (1 other biounit)

Crystal structure of human UHRF1 TTD in complex with 5-amino-2,4-dimethylpyridine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.45 Å

Oligo State

monomer

Ligands

3 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.1: 4 residues within 4Å: Chain A: D.24, F.31, Y.61, N.64 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:D.24, A:F.31, A:F.31, A:Y.61, A:Y.61 Hydrogen bonds: A:N.64, A:N.64 MPD.2: 5 residues within 4Å: Chain A: K.41, I.53, Q.68, M.69, N.70 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:Q.68, A:N.70 MPD.3: 3 residues within 4Å: Chain A: W.6, R.37, H.55 3 PLIP interactions: 3 interactions with chain A Water bridges: A:E.8, A:R.37, A:Q.68

1 x 8NF: 5-amino-2,4-dimethylpyridine(Non-covalent)

8NF.4: 9 residues within 4Å: Chain A: D.21, W.30, F.31, E.32, R.77, A.78, M.94, W.108, F.148 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:W.108, A:W.108, A:F.148 Hydrogen bonds: A:A.78 pi-Stacking: A:W.108

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.5: 1 residues within 4Å: Chain A: E.49 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.49

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.6: 1 residues within 4Å: Chain A: R.45 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kori, S. et al., Structure-based screening combined with computational and biochemical analyses identified the inhibitor targeting the binding of DNA Ligase 1 to UHRF1. Bioorg.Med.Chem. (2021)

Release Date

2022-01-05

Peptides

E3 ubiquitin-protein ligase UHRF1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

E3 ubiquitin-protein ligase UHRF1

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