SMTL ID : 7fby.1

Crystal Structure of PH0140 from Pyrococcus horikosii OT3

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-octamer

Ligands

8 x ILE: ISOLEUCINE(Non-covalent)

ILE.1: 10 residues within 4Å: Chain A: I.105, V.106, T.107, G.108, H.110, D.111 Chain C: I.128, T.141, E.142, T.143 9 PLIP interactions: 4 interactions with chain A, 5 interactions with chain C Hydrophobic interactions: A:I.105, A:D.111, C:I.128 Hydrogen bonds: A:G.108, A:G.108, C:T.141, C:T.141, C:T.143, C:T.143 ILE.4: 10 residues within 4Å: Chain B: I.105, V.106, T.107, G.108, H.110, D.111 Chain D: I.128, T.141, E.142, T.143 9 PLIP interactions: 5 interactions with chain D, 4 interactions with chain B Hydrophobic interactions: D:I.128, B:I.105, B:D.111 Hydrogen bonds: D:T.141, D:T.141, D:T.143, D:T.143, B:G.108, B:G.108 ILE.7: 10 residues within 4Å: Chain B: I.128, T.141, E.142, T.143 Chain C: I.105, V.106, T.107, G.108, H.110, D.111 9 PLIP interactions: 4 interactions with chain C, 5 interactions with chain B Hydrophobic interactions: C:I.105, C:D.111, B:I.128 Hydrogen bonds: C:G.108, C:G.108, B:T.141, B:T.141, B:T.143, B:T.143 ILE.10: 10 residues within 4Å: Chain A: I.128, T.141, E.142, T.143 Chain D: I.105, V.106, T.107, G.108, H.110, D.111 9 PLIP interactions: 4 interactions with chain D, 5 interactions with chain A Hydrophobic interactions: D:I.105, D:D.111, A:I.128 Hydrogen bonds: D:G.108, D:G.108, A:T.141, A:T.141, A:T.143, A:T.143 ILE.13: 10 residues within 4Å: Chain E: I.105, V.106, T.107, G.108, H.110, D.111 Chain G: I.128, T.141, E.142, T.143 8 PLIP interactions: 3 interactions with chain G, 5 interactions with chain E Hydrophobic interactions: G:I.128, E:I.105, E:D.111 Hydrogen bonds: G:T.141, G:T.143, E:G.108, E:G.108, E:D.111 ILE.16: 10 residues within 4Å: Chain F: I.105, V.106, T.107, G.108, H.110, D.111 Chain H: I.128, T.141, E.142, T.143 8 PLIP interactions: 3 interactions with chain H, 5 interactions with chain F Hydrophobic interactions: H:I.128, F:I.105, F:D.111 Hydrogen bonds: H:T.141, H:T.143, F:G.108, F:G.108, F:D.111 ILE.19: 10 residues within 4Å: Chain F: I.128, T.141, E.142, T.143 Chain G: I.105, V.106, T.107, G.108, H.110, D.111 8 PLIP interactions: 5 interactions with chain G, 3 interactions with chain F Hydrophobic interactions: G:I.105, G:D.111, F:I.128 Hydrogen bonds: G:G.108, G:G.108, G:D.111, F:T.141, F:T.143 ILE.22: 10 residues within 4Å: Chain E: I.128, T.141, E.142, T.143 Chain H: I.105, V.106, T.107, G.108, H.110, D.111 8 PLIP interactions: 5 interactions with chain H, 3 interactions with chain E Hydrophobic interactions: H:I.105, H:D.111, E:I.128 Hydrogen bonds: H:G.108, H:G.108, H:D.111, E:T.141, E:T.143

16 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 6 residues within 4Å: Chain A: E.73, I.74, D.120, L.121, Q.122 Chain D: R.8 Ligand excluded by PLIP EDO.3: 3 residues within 4Å: Chain A: R.59, Y.154, R.156 Ligand excluded by PLIP EDO.5: 6 residues within 4Å: Chain B: E.73, I.74, D.120, L.121, Q.122 Chain C: R.8 Ligand excluded by PLIP EDO.6: 3 residues within 4Å: Chain B: R.59, Y.154, R.156 Ligand excluded by PLIP EDO.8: 6 residues within 4Å: Chain A: R.8 Chain C: E.73, I.74, D.120, L.121, Q.122 Ligand excluded by PLIP EDO.9: 3 residues within 4Å: Chain C: R.59, Y.154, R.156 Ligand excluded by PLIP EDO.11: 6 residues within 4Å: Chain B: R.8 Chain D: E.73, I.74, D.120, L.121, Q.122 Ligand excluded by PLIP EDO.12: 3 residues within 4Å: Chain D: R.59, Y.154, R.156 Ligand excluded by PLIP EDO.14: 6 residues within 4Å: Chain E: E.73, I.74, D.120, L.121, Q.122 Chain H: R.8 Ligand excluded by PLIP EDO.15: 3 residues within 4Å: Chain E: R.59, Y.154, R.156 Ligand excluded by PLIP EDO.17: 6 residues within 4Å: Chain F: E.73, I.74, D.120, L.121, Q.122 Chain G: R.8 Ligand excluded by PLIP EDO.18: 3 residues within 4Å: Chain F: R.59, Y.154, R.156 Ligand excluded by PLIP EDO.20: 6 residues within 4Å: Chain E: R.8 Chain G: E.73, I.74, D.120, L.121, Q.122 Ligand excluded by PLIP EDO.21: 3 residues within 4Å: Chain G: R.59, Y.154, R.156 Ligand excluded by PLIP EDO.23: 6 residues within 4Å: Chain F: R.8 Chain H: E.73, I.74, D.120, L.121, Q.122 Ligand excluded by PLIP EDO.24: 3 residues within 4Å: Chain H: R.59, Y.154, R.156 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Richard, M. et al., Crystal Structure of PH0140 from Pyrococcus horikosii OT3. To Be Published

Release Date

2022-07-20

Peptides

Transcriptional regulatory protein: ABCDEFGH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

E
A

F
A

G
A

H
A

Transcriptional regulatory protein