SMTL ID : 7fc3.1

structure of NL63 receptor-binding domain complexed with horse ACE2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.19 Å

Oligo State

hetero-1-1-mer

Ligands

1 x NAG- FUC: alpha-L-fucopyranose-(1-6)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-FUC.1: 7 residues within 4Å: Chain A: H.106, Y.107, Y.110 Chain B: E.294, N.304, M.305, W.310 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.304, B:N.304

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.2: 5 residues within 4Å: Chain B: K.8, N.72, L.73, T.74, V.75 No protein-ligand interaction detected (PLIP)

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.3: 3 residues within 4Å: Chain B: N.35, T.37, N.40 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:N.35, B:N.40

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lan, J. et al., Structural insights into the binding of SARS-CoV-2, SARS-CoV, and hCoV-NL63 spike receptor-binding domain to horse ACE2. Structure (2022)

Release Date

2021-09-22

Peptides

Spike protein S1: A
Angiotensin-converting enzyme: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
E

B
A

Spike protein S1

Angiotensin-converting enzyme