SMTL ID : 7fcq.1

Crystallographic structure of neutralizing antibody P14-44 in complex with SARS-CoV-2 spike receptor-binding Domain (RBD)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.89 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)

NAG.1: 3 residues within 4Å: Chain A: F.9, G.10, N.14 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:F.9 Hydrogen bonds: A:N.14

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 7 residues within 4Å: Chain A: K.49, Y.51, A.82 Chain B: A.100, R.101, Y.103, Y.114 1 PLIP interactions: 1 interactions with chain B Water bridges: B:P.112 GOL.3: 5 residues within 4Å: Chain A: R.17, F.18, S.20, N.121, Y.122 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.20, A:N.121, A:Y.122 GOL.4: 6 residues within 4Å: Chain C: K.153, D.155, S.156, S.196, E.207, T.209 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:S.156, C:E.207 Water bridges: C:T.209

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zou, J. et al., Ultrapotent neutralizing antibodies against SARS-CoV-2 with a high degree of mutation resistance. J.Clin.Invest. (2022)

Release Date

2022-06-15

Peptides

Spike protein S1: A
P14-44 antibody Fab fragment heavy chain: B
P14-44 antibody Fab fragment light chain: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
H

C
L

Spike protein S1

P14-44 antibody Fab fragment heavy chain

P14-44 antibody Fab fragment light chain

Related Entries With Identical Sequence