SMTL ID : 7fdg.1

SARS-COV-2 Spike RBDMACSp6 binding to hACE2

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-mer

Ligands

5 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 1 residues within 4Å: Chain A: N.322 No protein-ligand interaction detected (PLIP) NAG.2: 4 residues within 4Å: Chain A: N.53, T.55, V.339, Q.340 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:V.339 Hydrogen bonds: A:N.53 NAG.3: 4 residues within 4Å: Chain A: S.420, D.543, S.545, N.546 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.546 NAG.4: 2 residues within 4Å: Chain A: K.26, N.90 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.26, A:N.90 NAG.5: 2 residues within 4Å: Chain B: E.21, N.24 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sun, S. et al., Characterization and structural basis of a lethal mouse-adapted SARS-CoV-2. Nat Commun (2021)

Release Date

2021-08-25

Peptides

Angiotensin-converting enzyme 2: A
Spike protein S1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
E

Angiotensin-converting enzyme 2

Spike protein S1

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