SMTL ID : 7fdh.1

SARS-COV-2 Spike RBDMACSp25 binding to hACE2

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-mer

Ligands

5 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 4 residues within 4Å: Chain A: S.420, D.543, S.545, N.546 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.420, A:N.546 NAG.2: 2 residues within 4Å: Chain A: N.90, T.92 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.90 NAG.3: 2 residues within 4Å: Chain A: N.322, M.323 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.322 NAG.4: 2 residues within 4Å: Chain A: N.53, Q.340 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.340 NAG.5: 5 residues within 4Å: Chain B: F.23, N.24, L.49, S.54, F.55 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:F.23, B:L.49 Hydrogen bonds: B:S.54, B:S.54

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sun, S. et al., Characterization and structural basis of a lethal mouse-adapted SARS-CoV-2. Nat Commun (2021)

Release Date

2021-08-25

Peptides

Angiotensin-converting enzyme 2: A
Spike protein S1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
E

Angiotensin-converting enzyme 2

Spike protein S1

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