SMTL ID : 7fdk.1

SARS-COV-2 Spike RBDMACSp36 binding to mACE2

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-mer

Ligands

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 4 residues within 4Å: Chain A: S.420, D.543, S.545, N.546 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.420, A:S.420, A:S.420, A:N.546 NAG.2: 5 residues within 4Å: Chain A: N.53, T.55, E.57, N.58, R.340 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.53, A:T.55, A:E.57 NAG.3: 1 residues within 4Å: Chain B: N.24 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sun, S. et al., Characterization and structural basis of a lethal mouse-adapted SARS-CoV-2. Nat Commun (2021)

Release Date

2021-08-25

Peptides

Angiotensin-converting enzyme 2: A
Spike protein S1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
E

Angiotensin-converting enzyme 2

Spike protein S1