SMTL ID : 7fdn.1

Crystal structure of transcription factor WER in complex with EGL3

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-dimer

Ligands

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 2 residues within 4Å: Chain A: R.15 Ligands: SO4.2 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.15 SO4.2: 8 residues within 4Å: Chain A: R.15, Y.41, Y.42, N.43, G.44, G.63, R.66 Ligands: SO4.1 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:R.15, A:Y.42 Water bridges: A:R.66, A:R.66, A:R.66, A:R.66 SO4.5: 6 residues within 4Å: Chain B: Y.41, Y.42, N.43, G.44, I.46, R.66 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:R.15, B:Y.41 Water bridges: B:R.66, B:R.66

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 1 residues within 4Å: Chain A: L.77 No protein-ligand interaction detected (PLIP)

1 x NA: SODIUM ION(Non-functional Binders)

NA.4: 7 residues within 4Å: Chain A: F.119, G.124, I.125, P.126, F.149, T.150, R.151 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:I.125, A:T.150, A:T.150, A:R.151

3 x CL: CHLORIDE ION(Non-functional Binders)

CL.6: 1 residues within 4Å: Chain B: R.15 Ligand excluded by PLIP CL.7: 7 residues within 4Å: Chain B: F.119, G.124, I.125, P.126, F.149, T.150, R.151 Ligand excluded by PLIP CL.8: 5 residues within 4Å: Chain B: C.139, N.140, Q.161, T.162, H.180 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, B. et al., Structural insights into partner selection for MYB and bHLH transcription factor complexes. Nat.Plants (2021)

Release Date

2022-07-20

Peptides

Transcription factor EGL1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Transcription factor EGL1

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