SMTL ID : 7fgq.1

Crystal structure of Thymidylate kinase with TMP and its low-resolution (SAXS) solution structure from Brugia malayi

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.91 Å

Oligo State

homo-dimer

Ligands

2 x TMP: THYMIDINE-5'-PHOSPHATE(Non-covalent)

TMP.1: 10 residues within 4Å: Chain A: D.49, F.76, P.77, R.79, L.91, F.106, R.110, R.131, G.136, Y.139 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:F.76, A:Y.139 Hydrogen bonds: A:R.110, A:R.110 Water bridges: A:G.136 Salt bridges: A:R.79, A:R.131 pi-Stacking: A:F.106, A:Y.139 TMP.2: 10 residues within 4Å: Chain B: D.49, F.76, P.77, R.79, L.91, F.106, R.110, R.131, G.136, Y.139 10 PLIP interactions: 10 interactions with chain B Hydrophobic interactions: B:F.76, B:Y.139 Hydrogen bonds: B:D.49, B:R.110, B:R.110 Water bridges: B:G.136 Salt bridges: B:R.79, B:R.131 pi-Stacking: B:F.106, B:Y.139

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ramachandran, R. et al., Crystal structure of Thymidylate kinase with TMP and its low-resolution (SAXS) solution structure from Brugia malayi. To Be Published

Release Date

2022-07-27

Peptides

dTMP kinase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

dTMP kinase