- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.15 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x NDP: NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)
- 2 x CP6: 5-(4-CHLORO-PHENYL)-6-ETHYL-PYRIMIDINE-2,4-DIAMINE(Non-covalent)
CP6.2: 13 residues within 4Å:- Chain A: V.8, V.9, A.10, D.31, F.35, T.83, S.86, M.87, V.151, Y.157, T.172
- Ligands: NDP.1, BEN.3
9 PLIP interactions:9 interactions with chain A- Hydrophobic interactions: A:F.35, A:F.35
- Hydrogen bonds: A:V.8, A:V.9, A:T.172
- Water bridges: A:V.9
- Salt bridges: A:D.31
- pi-Stacking: A:F.35
- Halogen bonds: A:T.83
CP6.6: 13 residues within 4Å:- Chain B: V.8, V.9, A.10, D.31, F.32, F.35, T.83, S.86, M.87, V.151, Y.157, T.172
- Ligands: NDP.5
10 PLIP interactions:10 interactions with chain B- Hydrophobic interactions: B:F.35, B:F.35
- Hydrogen bonds: B:V.151, B:Y.157, B:T.172, B:T.172
- Water bridges: B:V.9
- Salt bridges: B:D.31
- pi-Stacking: B:F.35
- Halogen bonds: B:T.83
- 1 x BEN: BENZAMIDINE(Non-functional Binders)
- 2 x UMP: 2'-DEOXYURIDINE 5'-MONOPHOSPHATE(Non-covalent)
UMP.4: 14 residues within 4Å:- Chain A: R.344, C.489, H.490, Q.509, R.510, S.511, C.512, D.513, G.517, N.521, H.551, Y.553
- Chain B: R.469, R.470
12 PLIP interactions:10 interactions with chain A, 2 interactions with chain B- Hydrophobic interactions: A:D.513
- Hydrogen bonds: A:Q.509, A:S.511, A:D.513, A:N.521, A:N.521, A:H.551, A:Y.553
- Salt bridges: A:R.344, A:R.510, B:R.469, B:R.470
UMP.7: 13 residues within 4Å:- Chain A: R.469, R.470
- Chain B: C.489, H.490, Q.509, R.510, S.511, C.512, D.513, G.517, N.521, H.551, Y.553
12 PLIP interactions:8 interactions with chain B, 4 interactions with chain A- Hydrophobic interactions: B:D.513
- Hydrogen bonds: B:Q.509, B:S.511, B:D.513, B:N.521, B:N.521, B:H.551
- Salt bridges: B:R.510, A:R.469, A:R.470
- Water bridges: A:R.470, A:R.470
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Vanichtanankul, J. et al., Structural Insight into Effective Inhibitors' Binding to Toxoplasma gondii Dihydrofolate Reductase Thymidylate Synthase. Acs Chem.Biol. (2022)
- Release Date
- 2022-06-29
- Peptides
- Bifunctional dihydrofolate reductase-thymidylate synthase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
CB
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.15 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x NDP: NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)
- 2 x CP6: 5-(4-CHLORO-PHENYL)-6-ETHYL-PYRIMIDINE-2,4-DIAMINE(Non-covalent)
- 1 x BEN: BENZAMIDINE(Non-functional Binders)
- 2 x UMP: 2'-DEOXYURIDINE 5'-MONOPHOSPHATE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Vanichtanankul, J. et al., Structural Insight into Effective Inhibitors' Binding to Toxoplasma gondii Dihydrofolate Reductase Thymidylate Synthase. Acs Chem.Biol. (2022)
- Release Date
- 2022-06-29
- Peptides
- Bifunctional dihydrofolate reductase-thymidylate synthase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
CB
D