SMTL ID : 7fh1.1

Structure of the human Meckelin

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-dimer

Ligands

6 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)

NAG-NAG.1: 3 residues within 4Å: Chain A: D.139, N.141, T.143 No protein-ligand interaction detected (PLIP) NAG-NAG.2: 3 residues within 4Å: Chain A: N.179 Chain B: S.88, N.90 No protein-ligand interaction detected (PLIP) NAG-NAG.3: 2 residues within 4Å: Chain A: P.316, N.318 No protein-ligand interaction detected (PLIP) NAG-NAG.5: 3 residues within 4Å: Chain B: D.139, N.141, T.143 No protein-ligand interaction detected (PLIP) NAG-NAG.6: 2 residues within 4Å: Chain A: N.90 Chain B: N.179 No protein-ligand interaction detected (PLIP) NAG-NAG.7: 2 residues within 4Å: Chain B: N.318, N.480 No protein-ligand interaction detected (PLIP)

2 x NAG- NAG- BMA- BMA- BMA: beta-D-mannopyranose-(1-3)-[beta-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-BMA-BMA.4: 14 residues within 4Å: Chain A: E.174, P.175, T.176, G.194, G.195, L.196, K.228, Y.229, N.242, T.244, S.245, R.340 Chain B: N.90, G.91 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:R.340 Hydrogen bonds: A:E.174 NAG-NAG-BMA-BMA-BMA.8: 10 residues within 4Å: Chain A: N.90, G.91 Chain B: E.174, T.176, G.194, G.195, L.196, Y.229, N.242, R.340 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:E.174, B:Y.229

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, D. et al., Structure of the human Meckel-Gruber protein Meckelin. Sci Adv (2021)

Release Date

2021-12-01

Peptides

Meckelin: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Membrane

We predict this structure to be a membrane protein.
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Meckelin