SMTL ID : 7fh2.2 (3 other biounits)

Crystal structure of the first bromodomain of BRD4 in complex with 16D10

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.49 Å

Oligo State

monomer

Ligands

2 x 4JI: N-[2-[2-[(E)-3-(2,5-dimethoxyphenyl)prop-2-enoyl]-4,5-dimethoxy-phenyl]ethyl]ethanamide(Non-covalent)

4JI.1: 11 residues within 4Å: Chain A: W.48, P.49, Q.52, V.54, L.59, L.61, C.103, N.107, D.111, I.113 Ligands: 4JI.2 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:W.48, A:V.54, A:L.59, A:L.59, A:L.61, A:I.113 Hydrogen bonds: A:N.107, A:N.107 Water bridges: A:I.113 pi-Stacking: A:W.48 4JI.2: 6 residues within 4Å: Chain A: D.55, V.57, K.58, L.59, N.60 Ligands: 4JI.1 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:K.58, A:K.58 Hydrogen bonds: A:N.60

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 2 residues within 4Å: Chain A: N.84, W.87 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Segawa, R. et al., A chalcone derivative suppresses TSLP induction in mice and human keratinocytes through binding to BET family proteins. Biochem Pharmacol (2021)

Release Date

2022-08-03

Peptides

Bromodomain-containing protein 4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Bromodomain-containing protein 4

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