SMTL ID : 7fh3.1

Crystal structure of the ATP sulfurylase domain of human PAPSS2

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-dimer

Ligands

12 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: R.157, G.161, D.163, Q.164 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:G.161, A:D.163, A:Q.164 Water bridges: A:R.157, A:R.157, A:L.162 Salt bridges: A:R.157 SO4.2: 6 residues within 4Å: Chain A: Q.188, L.189, R.190, M.264, P.293, A.294 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Q.188, A:A.294 Water bridges: A:Q.188, A:R.190 Salt bridges: A:R.190 SO4.3: 4 residues within 4Å: Chain A: S.82, A.83, G.142, D.143 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:A.83, A:D.143 SO4.4: 3 residues within 4Å: Chain A: H.194, H.197, R.291 7 PLIP interactions: 7 interactions with chain A Water bridges: A:N.191, A:N.191, A:R.291, A:R.291 Salt bridges: A:H.194, A:H.197, A:R.291 SO4.5: 6 residues within 4Å: Chain A: N.195, V.249, G.373, M.375, A.376, P.377 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.195, A:M.375 Water bridges: A:G.373 SO4.6: 2 residues within 4Å: Chain A: R.207, R.211 5 PLIP interactions: 5 interactions with chain A Water bridges: A:R.207, A:R.207, A:R.207 Salt bridges: A:R.207, A:R.211 SO4.7: 2 residues within 4Å: Chain A: K.94, R.108 3 PLIP interactions: 3 interactions with chain A Water bridges: A:K.94 Salt bridges: A:K.94, A:R.108 SO4.9: 4 residues within 4Å: Chain B: S.82, A.83, G.142, D.143 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:A.83, B:D.143 Water bridges: B:S.141, B:D.143 SO4.10: 6 residues within 4Å: Chain B: Q.188, L.189, R.190, M.264, P.293, A.294 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:Q.188, B:A.294 Water bridges: B:R.190, B:N.191, B:R.291, B:D.292 Salt bridges: B:R.190 SO4.11: 6 residues within 4Å: Chain B: N.195, V.249, G.373, M.375, A.376, P.377 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:N.195, B:G.373 Water bridges: B:F.374, B:M.375 SO4.12: 2 residues within 4Å: Chain B: K.94, R.108 2 PLIP interactions: 2 interactions with chain B Salt bridges: B:K.94, B:R.108 SO4.13: 4 residues within 4Å: Chain B: N.191, H.194, H.197, R.291 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:N.191 Water bridges: B:H.197, B:R.291, B:G.357 Salt bridges: B:H.194, B:H.197, B:R.291

2 x BGC: beta-D-glucopyranose(Non-covalent)

BGC.8: 7 residues within 4Å: Chain A: G.224, G.225, W.226, T.227, P.233, L.234, R.237 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:G.224, A:T.227, A:D.229, A:L.234, A:R.237 Water bridges: A:K.30, A:W.226, A:W.226, A:T.227, A:T.227, A:T.227, A:D.235 BGC.14: 7 residues within 4Å: Chain B: G.224, G.225, W.226, T.227, P.233, L.234, R.237 9 PLIP interactions: 9 interactions with chain B Hydrogen bonds: B:G.224, B:W.226, B:T.227, B:L.234, B:R.237 Water bridges: B:T.227, B:T.227, B:D.229, B:D.235

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, P. et al., Structural basis for the substrate recognition mechanism of ATP-sulfurylase domain of human PAPS synthase 2. Biochem.Biophys.Res.Commun. (2022)

Release Date

2021-12-01

Peptides

Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 2: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 2

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