SMTL ID : 7fh6.1

Friedel-Crafts alkylation enzyme CylK

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.55 Å

Oligo State

monomer

Ligands

3 x MG: MAGNESIUM ION(Non-covalent)(Non-functional Binders)

MG.1: 2 residues within 4Å: Chain A: D.554, I.555 6 PLIP interactions: 1 interactions with chain A, 5 Ligand-Water interactions Metal complexes: A:D.554, H2O.2, H2O.5, H2O.10, H2O.18, H2O.23 MG.2: 4 residues within 4Å: Chain A: D.161, T.163, E.206, Y.210 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.161, A:T.163, A:Y.210, H2O.6, H2O.18 MG.3: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

12 x CA: CALCIUM ION(Non-covalent)

CA.4: 6 residues within 4Å: Chain A: T.76, S.78, D.80, G.96, H.98, D.101 6 PLIP interactions: 6 interactions with chain A Metal complexes: A:T.76, A:S.78, A:D.80, A:G.96, A:H.98, A:D.101 CA.5: 7 residues within 4Å: Chain A: R.97, H.98, G.99, D.101, G.123, D.124, D.145 6 PLIP interactions: 6 interactions with chain A Metal complexes: A:R.97, A:G.99, A:D.101, A:G.123, A:D.124, A:D.145 CA.6: 5 residues within 4Å: Chain A: D.124, W.143, D.145, E.179, D.180 6 PLIP interactions: 5 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.124, A:W.143, A:D.145, A:E.179, A:D.180, H2O.4 CA.7: 6 residues within 4Å: Chain A: Y.157, E.159, G.165, Q.168, D.211, L.212 6 PLIP interactions: 6 interactions with chain A Metal complexes: A:Y.157, A:E.159, A:G.165, A:Q.168, A:D.211, A:L.212 CA.8: 6 residues within 4Å: Chain A: T.249, A.251, D.253, G.633, Y.635, D.636 6 PLIP interactions: 6 interactions with chain A Metal complexes: A:T.249, A:A.251, A:D.253, A:G.633, A:Y.635, A:D.636 CA.9: 6 residues within 4Å: Chain A: G.282, R.284, D.285, S.305, G.307, E.309 6 PLIP interactions: 6 interactions with chain A Metal complexes: A:G.282, A:R.284, A:D.285, A:S.305, A:G.307, A:E.309 CA.10: 6 residues within 4Å: Chain A: G.338, N.340, D.341, T.361, T.363, E.365 6 PLIP interactions: 6 interactions with chain A Metal complexes: A:G.338, A:N.340, A:D.341, A:T.361, A:T.363, A:E.365 CA.11: 5 residues within 4Å: Chain A: T.406, D.407, T.427, T.429, D.431 6 PLIP interactions: 5 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:T.406, A:D.407, A:T.427, A:T.429, A:D.431, H2O.4 CA.12: 5 residues within 4Å: Chain A: Y.465, D.466, T.486, N.488, D.490 6 PLIP interactions: 5 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:Y.465, A:D.466, A:T.486, A:N.488, A:D.490, H2O.4 CA.13: 6 residues within 4Å: Chain A: G.519, Y.521, D.522, T.542, E.544, D.546 6 PLIP interactions: 6 interactions with chain A Metal complexes: A:G.519, A:Y.521, A:D.522, A:T.542, A:E.544, A:D.546 CA.14: 6 residues within 4Å: Chain A: G.577, Y.579, D.580, T.600, D.602, D.604 6 PLIP interactions: 6 interactions with chain A Metal complexes: A:G.577, A:Y.579, A:D.580, A:T.600, A:D.602, A:D.604 CA.15: 3 residues within 4Å: Chain A: D.494, D.551, I.553 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.494, A:D.551, A:I.553, H2O.9, H2O.16

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.16: 5 residues within 4Å: Chain A: T.76, V.77, R.97, Y.465, F.491 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, H.Q. et al., Structural Basis for the Friedel-Crafts Alkylation in Cylindrocyclophane Biosynthesis. ACS Catal. (2022)

Release Date

2022-02-16

Peptides

CylK: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

CylK