SMTL ID : 7fhs.1 (3 other biounits)

Crystal structure of DYRK1A in complex with RD0392

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.42 Å

Oligo State

monomer

Ligands

1 x 4VZ: (5~{Z})-5-[(3-ethoxy-4-oxidanyl-phenyl)methylidene]-2-sulfanylidene-1,3-thiazolidin-4-one(Non-covalent)

4VZ.1: 13 residues within 4Å: Chain A: I.41, F.46, A.62, K.64, E.79, F.114, E.115, M.116, L.117, L.170, V.182, D.183 Ligands: GOL.3 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:A.62, A:F.114, A:F.114, A:L.117, A:V.182 Hydrogen bonds: A:E.79, A:E.79, A:L.117, A:D.183 Water bridges: A:L.117, A:S.118, A:F.184, A:F.184

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 2 residues within 4Å: Chain A: K.266, K.269 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.266 GOL.3: 4 residues within 4Å: Chain A: E.167, N.168, L.170 Ligands: 4VZ.1 No protein-ligand interaction detected (PLIP) GOL.4: 1 residues within 4Å: Chain A: E.290 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Miyazaki, Y. et al., Structure-activity relationship for the folding intermediate-selective inhibition of DYRK1A. Eur.J.Med.Chem. (2022)

Release Date

2022-03-23

Peptides

Dual specificity tyrosine-phosphorylation-regulated kinase 1A: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Dual specificity tyrosine-phosphorylation-regulated kinase 1A

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