SMTL ID : 7fic.1

Reversible lysine-targeted probes reveal residence time-based kinase selectivity in vivo

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.32 Å

Oligo State

monomer

Ligands

1 x 5YZ: 6-[(5-cyclopropyl-1~{H}-pyrazol-3-yl)amino]-2-[4-[(3-methyl-4-oxidanyl-phenyl)methyl]piperazin-1-yl]-~{N}-prop-2-ynyl-pyrimidine-4-carboxamide(Covalent)

5YZ.1: 21 residues within 4Å: Chain A: L.13, G.14, K.15, G.16, G.19, V.21, A.34, K.36, L.68, L.84, E.85, Y.86, A.87, P.88, L.89, G.90, R.94, L.137, F.149, G.150, S.152 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:V.21, A:A.34, A:K.36, A:L.68, A:L.84, A:L.137 Hydrogen bonds: A:K.36, A:K.36, A:E.85, A:A.87, A:A.87, A:P.88 Water bridges: A:R.94, A:R.94

3 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 1 residues within 4Å: Chain A: K.213 Ligand excluded by PLIP CL.3: 2 residues within 4Å: Chain A: M.174, H.180 Ligand excluded by PLIP CL.4: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yang, T. et al., Reversible lysine-targeted probes reveal residence time-based kinase selectivity. Nat.Chem.Biol. (2022)

Release Date

2022-06-08

Peptides

Aurora kinase A: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Aurora kinase A

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