SMTL ID : 7fip.1

The native structure of beta-1,2-mannobiose phosphorylase from Thermoanaerobacter sp.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.39 Å

Oligo State

homo-tetramer

Ligands

16 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: D.160, R.177, H.230, F.279 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.160, A:D.160, A:H.230, H2O.2 ZN.2: 3 residues within 4Å: Chain A: H.205 Chain B: P.180, D.181 4 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: B:D.181, B:D.181, A:H.205, H2O.17 ZN.3: 3 residues within 4Å: Chain A: P.180, D.181 Chain B: H.205 5 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B, 2 Ligand-Water interactions Metal complexes: A:D.181, A:D.181, B:H.205, H2O.7, H2O.9 ZN.4: 2 residues within 4Å: Chain A: E.259 Chain D: H.205 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain D Metal complexes: A:E.259, A:E.259, D:H.205 ZN.5: 2 residues within 4Å: Chain A: H.30, D.92 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:H.30, A:D.92 ZN.6: 4 residues within 4Å: Chain A: E.103, Y.123, C.137, H.150 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:E.103, A:C.137, A:H.150 ZN.7: 2 residues within 4Å: Chain B: H.30, D.92 3 PLIP interactions: 2 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.30, B:D.92, H2O.13 ZN.8: 3 residues within 4Å: Chain B: E.103, C.137, H.150 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:E.103, B:C.137, B:H.150 ZN.9: 4 residues within 4Å: Chain B: D.160, R.177, H.230, F.279 4 PLIP interactions: 2 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:D.160, B:H.230, H2O.14, H2O.18 ZN.10: 2 residues within 4Å: Chain B: E.259 Chain C: H.205 5 PLIP interactions: 2 interactions with chain B, 1 interactions with chain C, 2 Ligand-Water interactions Metal complexes: B:E.259, B:E.259, C:H.205, H2O.18, H2O.18 ZN.11: 4 residues within 4Å: Chain C: D.160, R.177, H.230, F.279 4 PLIP interactions: 3 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:D.160, C:D.160, C:H.230, H2O.27 ZN.12: 4 residues within 4Å: Chain C: E.103, Y.123, C.137, H.150 4 PLIP interactions: 3 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:E.103, C:C.137, C:H.150, H2O.27 ZN.13: 2 residues within 4Å: Chain C: H.30, D.92 1 PLIP interactions: 1 interactions with chain C Metal complexes: C:H.30 ZN.14: 2 residues within 4Å: Chain D: H.30, D.92 1 PLIP interactions: 1 interactions with chain D Metal complexes: D:H.30 ZN.15: 3 residues within 4Å: Chain D: E.103, C.137, H.150 4 PLIP interactions: 3 interactions with chain D, 1 Ligand-Water interactions Metal complexes: D:E.103, D:C.137, D:H.150, H2O.32 ZN.16: 3 residues within 4Å: Chain D: D.160, R.177, H.230 4 PLIP interactions: 2 interactions with chain D, 2 Ligand-Water interactions Metal complexes: D:D.160, D:H.230, H2O.33, H2O.34

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dai, L. et al., Structural investigation of a thermostable 1,2-beta-mannobiose phosphorylase from Thermoanaerobacter sp. X-514. Biochem.Biophys.Res.Commun. (2021)

Release Date

2022-01-05

Peptides

Beta-1,2-mannobiose phosphorylase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Beta-1,2-mannobiose phosphorylase

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