SMTL ID : 7fjc.1

Crystal structure of SARS-CoV-2 Beta RBD complexed with P36-5D2 Fab

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.96 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x NAG- FUC: alpha-L-fucopyranose-(1-6)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-FUC.1: 3 residues within 4Å: Chain C: F.6, G.7, N.11 2 PLIP interactions: 2 interactions with chain C Hydrophobic interactions: C:F.6 Hydrogen bonds: C:N.11

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shan, S. et al., A Potent and Protective Human Neutralizing Antibody Against SARS-CoV-2 Variants. Front Immunol (2021)

Release Date

2022-08-10

Peptides

P36-5D2 heavy chain: A
P36-5D2 light chain: B
Spike protein S1: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
H

B
L

C
E

P36-5D2 heavy chain

P36-5D2 light chain

Spike protein S1