SMTL ID : 7fjs.1

Crystal structure of T6 Fab bound to theSARS-CoV-2 RBD of B.1.351

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

hetero-2-2-2-mer

Ligands

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 5 residues within 4Å: Chain B: F.6, G.7, F.10, N.11, L.36 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:F.6, B:F.10, B:L.36 Hydrogen bonds: B:N.11 NAG.2: 4 residues within 4Å: Chain E: G.7, F.10, N.11, L.36 3 PLIP interactions: 3 interactions with chain E Hydrophobic interactions: E:F.10, E:L.36 Hydrogen bonds: E:N.11

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liang, Q. et al., RBD trimer mRNA vaccine elicits broad and protective immune responses against SARS-CoV-2 variants. Iscience (2022)

Release Date

2022-04-27

Peptides

T6 light chain: AD
Spike protein S1: BE
T6 heavy chain: CF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
L

D
A

B
E

E
B

C
H

F
C

T6 light chain

Spike protein S1

T6 heavy chain

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