SMTL ID : 7fkq.1

PanDDA analysis group deposition -- Aar2/RNaseH in complex with fragment P04E09 from the F2X-Universal Library

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.68 Å

Oligo State

hetero-1-1-mer

Ligands

3 x VRY: 1-[(2-chloro-4-methoxyphenyl)methyl]-1H-1,2,4-triazole(Non-covalent)

VRY.1: 9 residues within 4Å: Chain B: P.9, F.10, T.11, Y.72, E.87, K.92, F.93, I.96, F.100 1 PLIP interactions: 1 interactions with chain B pi-Stacking: B:Y.72 VRY.2: 10 residues within 4Å: Chain B: I.21, Y.24, S.25, F.26, N.27, I.37, V.107, S.108, Y.109, P.110 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:Y.24, B:F.26 VRY.3: 7 residues within 4Å: Chain B: Q.152, E.153, I.172, Y.228, L.232, Q.233, A.236 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:Q.152, B:L.232 Hydrogen bonds: B:Y.228

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Barthel, T. et al., Large-Scale Crystallographic Fragment Screening Expedites Compound Optimization and Identifies Putative Protein-Protein Interaction Sites. J.Med.Chem. (2022)

Release Date

2022-11-02

Peptides

Pre-mRNA-splicing factor 8: A
A1 cistron-splicing factor AAR2: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Pre-mRNA-splicing factor 8

A1 cistron-splicing factor AAR2

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