- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.10 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x FBP: 1,6-di-O-phosphono-beta-D-fructofuranose(Non-covalent)
- 4 x OXL: OXALATE ION(Non-covalent)
OXL.2: 8 residues within 4Å:- Chain A: K.186, E.188, A.209, R.210, G.211, D.212, T.244
- Ligands: MG.3
9 PLIP interactions:9 interactions with chain A- Hydrogen bonds: A:G.211, A:D.212, A:T.244, A:T.244, A:T.244
- Water bridges: A:R.87
- Salt bridges: A:R.87, A:K.186, A:K.186
OXL.7: 8 residues within 4Å:- Chain B: K.186, E.188, A.209, R.210, G.211, D.212, T.244
- Ligands: MG.8
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:E.188, B:G.211, B:D.212
- Salt bridges: B:R.87, B:K.186
OXL.12: 8 residues within 4Å:- Chain C: K.186, E.188, A.209, R.210, G.211, D.212, T.244
- Ligands: MG.13
7 PLIP interactions:7 interactions with chain C- Hydrogen bonds: C:G.211, C:D.212
- Water bridges: C:K.186, C:E.188
- Salt bridges: C:R.87, C:K.186, C:K.186
OXL.16: 10 residues within 4Å:- Chain D: R.87, K.186, E.188, A.209, R.210, G.211, D.212, T.244, M.276
- Ligands: MG.17
7 PLIP interactions:7 interactions with chain D- Hydrogen bonds: D:G.211, D:D.212, D:T.244, D:T.244, D:T.244
- Salt bridges: D:R.87, D:K.186
- 4 x MG: MAGNESIUM ION(Non-covalent)
MG.3: 3 residues within 4Å:- Chain A: E.188, D.212
- Ligands: OXL.2
2 PLIP interactions:2 interactions with chain A- Metal complexes: A:E.188, A:D.212
MG.8: 3 residues within 4Å:- Chain B: E.188, D.212
- Ligands: OXL.7
2 PLIP interactions:2 interactions with chain B- Metal complexes: B:E.188, B:D.212
MG.13: 4 residues within 4Å:- Chain C: K.186, E.188, D.212
- Ligands: OXL.12
3 PLIP interactions:2 interactions with chain C, 1 Ligand-Water interactions- Metal complexes: C:E.188, C:D.212, H2O.13
MG.17: 3 residues within 4Å:- Chain D: E.188, D.212
- Ligands: OXL.16
2 PLIP interactions:2 interactions with chain D- Metal complexes: D:E.188, D:D.212
- 4 x K: POTASSIUM ION(Non-covalent)
K.4: 6 residues within 4Å:- Chain A: N.89, S.91, D.127, T.128, K.129, S.159
3 PLIP interactions:3 interactions with chain A- Metal complexes: A:S.91, A:D.127, A:T.128
K.9: 5 residues within 4Å:- Chain B: N.89, S.91, D.127, T.128, S.159
3 PLIP interactions:3 interactions with chain B- Metal complexes: B:S.91, B:D.127, B:T.128
K.14: 5 residues within 4Å:- Chain C: N.89, S.91, D.127, T.128, S.159
3 PLIP interactions:3 interactions with chain C- Metal complexes: C:S.91, C:D.127, C:T.128
K.18: 5 residues within 4Å:- Chain D: N.89, S.91, D.127, T.128, S.159
3 PLIP interactions:3 interactions with chain D- Metal complexes: D:S.91, D:D.127, D:T.128
- 2 x O7F: 4-[4-(3-aminobenzene-1-sulfonyl)piperazine-1-sulfonyl]benzene-1,2-diol(Non-covalent)
O7F.5: 17 residues within 4Å:- Chain A: F.40, L.41, L.269, D.270, Y.306, Q.309, L.310, E.313
- Chain C: F.40, L.41, L.44, L.269, D.270, Y.306, Q.309, L.310, E.313
12 PLIP interactions:6 interactions with chain A, 6 interactions with chain C- Hydrogen bonds: A:L.41, A:E.313, A:E.313, C:L.41, C:E.313, C:E.313
- Water bridges: A:Y.306
- pi-Stacking: A:F.40, C:F.40
- pi-Cation interactions: A:F.40, C:F.40
- Hydrophobic interactions: C:L.310
O7F.10: 18 residues within 4Å:- Chain B: F.40, L.41, L.44, L.269, D.270, Y.306, Q.309, L.310, E.313
- Chain D: F.40, L.41, L.44, L.269, D.270, Y.306, Q.309, L.310, E.313
10 PLIP interactions:5 interactions with chain B, 5 interactions with chain D- Hydrogen bonds: B:E.313, D:L.41, D:L.269
- Water bridges: B:D.270, B:Y.306
- pi-Stacking: B:F.40, D:F.40
- pi-Cation interactions: B:F.40, D:F.40
- Hydrophobic interactions: D:L.310
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Nain-Perez, A. et al., Tuning liver pyruvate kinase activity up or down with a new class of allosteric modulators. Eur.J.Med.Chem. (2023)
- Release Date
- 2023-04-12
- Peptides
- Pyruvate kinase PKLR: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D
SMTL ID : 7fs8.1 (1 other biounit)
Structure of liver pyruvate kinase in complex with allosteric modulator 21
Pyruvate kinase PKLR
Related Entries With Identical Sequence
5sc8.1 | 5sc8.2 | 5sc9.1 | 5sc9.2 | 5sca.1 | 5sca.2 | 5scb.1 | 5scb.2 | 5scc.1 | 5scc.2 | 5scd.1 | 5scd.2 | 5sce.1 | 5sce.2 | 5scf.1 | 5scf.2 | 5scg.1 | 5scg.2 | 5sch.1 | 5sch.2 | 5sci.1 | 5sci.2 | 5scj.1 | 5scj.2 | 5sck.1 | 5sck.2 | 5scl.1 | 5scl.2 | 5sdt.1 | 5sdt.2 more...less...7frv.1 | 7frv.2 | 7frw.1 | 7frw.2 | 7frx.1 | 7frx.2 | 7fry.1 | 7fry.2 | 7frz.1 | 7frz.2 | 7fs0.1 | 7fs0.2 | 7fs1.1 | 7fs1.2 | 7fs2.1 | 7fs2.2 | 7fs3.1 | 7fs3.2 | 7fs4.1 | 7fs4.2 | 7fs5.1 | 7fs5.2 | 7fs6.1 | 7fs6.2 | 7fs7.1 | 7fs7.2 | 7fs8.2 | 7fs9.1 | 7fs9.2 | 7fsa.1 | 7fsa.2 | 7fsb.1 | 7fsb.2 | 7fsc.1 | 7fsc.2 | 7fsd.1 | 7fsd.2 | 7qdn.1 | 7qdn.2 | 7qzu.1 | 7qzu.2