SMTL ID : 7fub.1

Crystal Structure of human cyclic GMP-AMP synthase in complex with 6-(2-chloro-4-methylphenyl)-3-(pyridin-4-ylmethyl)benzimidazole-4-carboxylic acid

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.98 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: H.230, C.236, C.237, C.244 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.230, A:C.236, A:C.237, A:C.244

1 x YQ3: (5M)-5-(2-chloro-4-methylphenyl)-1-[(pyridin-4-yl)methyl]-1H-benzimidazole-7-carboxylic acid(Non-covalent)

YQ3.2: 14 residues within 4Å: Chain A: K.59, K.202, R.216, S.218, F.219, S.220, I.222, E.223, I.226, Y.276, T.280, F.283, Y.323, F.324 18 PLIP interactions: 18 interactions with chain A Hydrophobic interactions: A:I.222, A:E.223, A:I.226, A:Y.276, A:Y.276, A:Y.276, A:F.283, A:F.283 Hydrogen bonds: A:K.59, A:K.202, A:F.219, A:S.220 Water bridges: A:R.216, A:N.322, A:N.322 Salt bridges: A:R.216 pi-Stacking: A:F.324 Halogen bonds: A:T.280

1 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.3: 3 residues within 4Å: Chain A: K.13, R.16 Ligands: MG.4 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:K.13, A:R.16

1 x MG: MAGNESIUM ION(Non-covalent)

MG.4: 2 residues within 4Å: Chain A: R.16 Ligands: ATP.3 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Groebke-Zbinden, K. et al., Crystal Structure of a human cyclic GMP-AMP synthase complex. To be published

Release Date

2024-02-21

Peptides

Cyclic GMP-AMP synthase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Cyclic GMP-AMP synthase

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